Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05830 ATGGAGTGCAACAAGGATGAAGCTCTGAGGGCAAAGCAAATTGCTGAAAATCGGATGCAAAGTGGTGACTTTGTAGGCGCACTGAAGTTTGCTACAAAAGCCAAAAAACTGTTTCCTGAGATTCAGAACATTACTCAGATCCTTACTGTTTGTGAGGTTCACTGTGCTGCACAGACCAAACTCTTTGGGTCTGAAATGGACTGGTATCAAATTCTTCAGGCTGATCGCTTTGCTGATGAAGTAACTATTAAAAAACAGTATAGGAAGCTTGCACTGCTACTTCATCCTGATAAAAATAAATCTGCTGGGGCAGAGGCTGCTTTCAAGTTGATTGGGGAAGCTAACAGATTCTTGAGTGACCAAACAAAGCGCCCTCAATATGACATGAGGATTAGAGGCCCTGTGGGAACTACAGTACCAAAGGTTCCATCCCATCACTCAAGTAGGAGTTCTTTTGGGGCAAAAGGTGATGTGAGTGTAAGAAATTATCAGACTAGTTTTCATTCACACCCCCATATGTGGAATTCCCATCAGCGGGCTGAACAGCAGACATTTTGGACATCATGCCCACATTGTAATACTAGGTACCAGTACTACAAAACCATTCTAAATGCTCCCTTGGACTGTCAACAATGCTCCAGGTCCTTCACAGCTCGTGATATGGGGTACCAGGGTGCATCAACAGGATATGCACGGTCATCATTTAATAACAATAAAGAGCCTTCAAAGCATGTCCCACCAAAAGAAGCATCAAAAAGTAAAGGTGGAAAACCTGGTGGTAGAGGACTGGAAGATAAGTTTGTGCGGTCTTCTCCTGTGTCTATGACAAAATGTGCTGCTGGAGTTGGTGTCAATCGTAAAGTAGAAAAGGGTAAAGATAGCCATGGGGGCACAGGAGTGACAAATGCTGGTGCTGGAACTTCCAACCCTGCTACATCCAAAGCCAAGGAATCACAGCCCTCAACAAAAGTTGGAAGTAAGAGAGCAAGGCAGTCAACATCTGATTTGAGAGATGATAACAATGCTAGAAATGGTAATGGCAAGAAAGATACAAATGTCCAAGAAAATGGTTTTGATACTTCTGGACTTAATGCGCAAGTCCACTCTAGGAGATCTTCCAGGAAAAAGCAGCATGTTTCATACACAGAAGCTTCTGAAGATGGTAATTTTGAGAGTTCTTCCAAAAGGCCACGACAACATGAATCATTTAACCCCACTGAAGTAAAGAAAAGAGAAGTACCTGAAAATGGTGGGTTGTTCAATAGCAATAATCCAGCTAGTTTTGCAGCTTGTGTGGCTGGTCAAAATGGAGAGATGAGAAACAAAGCTAGTTCCCCACCTGAAGAAACGGTTTTAAGGAATAAAACGAAAAAGGAGCAGTCGAATGTGCAAAGAAAGGAGGCATCCGAGTCAGATCTTGATGATAGAAAATCAAAAGCTGACAATTGTTCTCCACTGGATTCAAATTTCCCTTCCAATTTAGAGATTTCCTGTCCTGATCCAGATTTCAGTGATTTTGAGAAGGATAGGGCAGAGGATTGTTTTTCTGTTAATCAATTCTGGGCTATTTTTGATACTACTGATAGTATGCCAAGATTTTATGCTCTTGTCAGGAAAGTGTACTCCCCATTCAAGTTGCAGATTACTTGGCTGGAACCTGACTCAGATGACCAAGGTGAGATTGATTGGCATGATGCAGGTTTGCCTGTTGGCTGTTGTAAATTCAGGCTTGGTCATTCTCAGAGAACTACAAATCGTGCTATGTTCTCTCACCAGATGCATTGCATGAAAGGAGGTGACAAAGGTTCTTATCTGGTGTATCCAAAGAAGGGAGAAACTTGGGCCATTTTCAGACATTGGAATATCGGGTGGAGTTCAGATCCAAAAAAGCATTCAGAATATCAATTTGAATATGTGGAAGTCCTATCTGATTTTGATGAGAATGTTGGCATTAAAGTTACTTATCTTGGAAAAGTGAAGGGGTTTGTTAGTCTCTTTCAGCAAACTGTGCAGAATGGAATTAGCTTATTTTGTGTTCCACCTAATGAGCTGTACAGGTTTTCACATCGGATTCCATCATATAAGATGACTGGTGATGAAAGGGAAGGTGTTCCAAAAGGATCTTTTGAACTTGATCCTGCTGGTCTGCCTAATAGTCTTTTTGAAGCTGGCGATTCTGGTGATGTGAAGATGGAGGGTGGAATGTTAAACAATGGAGTCAGTTGTTCGCGCCAGGAATCCTCCAAGTGTAAAGTTGAACAGTCAATGTCTAATGAGAGTATTCGCAAAGCAAAGTTGCTAGAGAGTAATGGTGCTGAAATAGCTTCACCAATCCTTAGAAGATCCATGGGGTCAAATGGAAAACGTTTGGACAATGGTCAAGCAAGCATTAGTCAATATATGGTCAGAGAGGATGACAAAGACATTGGCCACAGGGACTTCAGTGAACCGAAGGGAATTGCTTCTACATGCCAGACTGATGAGAAAGTCAAGACACCGCAGAAACATGAGAAAAATAATTATGACAGGGAGATATTGAAAGTTCGAAGATCACCTAGAGATTTAAGCAAGAAAAATGATCTAGGAGATGCAGGTGAATGTACAATGGGTAAGTTGACTGATAATCATTCAAACACCAACAGAAATAAGGACAGCAGGTTTTATCAGTTGGTAGGAAGTGATCATGCACGTTTGAATAAAGATTGCAGAGTTGTGGGAGCATCATGTTATGACTTTAAGAAGAGAAAATCTGAGGAGATGTTTCAGTGTGATCAGATATGGGCAATATATGGTGTTAGGGATAAAAGGCCTGATATTTATGCTCAAATTAAGAAGATTGAATCCAGCCCTAATTTTAGATTGCATGTGTCTGAACTTGAACCCTGTTCTCCACCAAAAGGCTTAAAAAGAACAATAGCTTGTGGTACCTTCAAAGTTAAGAAAGCCAAATCGCAGATTCTTCCTCTTTCTTCATTCTCTCATCAACTAAAAGTTGAACCCGTGGCAAATGATAAATATGAAATTTACCCTCGAAAAGGTGAGATTTGGGCTCTATACAAGGACCAGACCTATGAACTAACTTCTTCAAACCAGGGCAGAGATGAATGTCATATAGTGGAAGTATTAGCAGATACTGACAAGAGTATACAAGTTGTTGTTCTGATGCCCCTTAGCAGCTCTCATCCAATTTTCAAGGCTCCTAGAATCCAGAGATCTAAGACTGGTATAATTGAAATATTAAAAGAAGAGGTTGGTAGATTTTCGCATCAGATTCCTGCTTTTCAGCACAGTGGGGAAGACGATGCTAGTCTCAGAGGGTGTTGGGTGCTTGATCCTTCTTCAGTTCCTGGTTTTGTCATACAAGTAGACTGA 3372 0.411 MECNKDEALRAKQIAENRMQSGDFVGALKFATKAKKLFPEIQNITQILTVCEVHCAAQTKLFGSEMDWYQILQADRFADEVTIKKQYRKLALLLHPDKNKSAGAEAAFKLIGEANRFLSDQTKRPQYDMRIRGPVGTTVPKVPSHHSSRSSFGAKGDVSVRNYQTSFHSHPHMWNSHQRAEQQTFWTSCPHCNTRYQYYKTILNAPLDCQQCSRSFTARDMGYQGASTGYARSSFNNNKEPSKHVPPKEASKSKGGKPGGRGLEDKFVRSSPVSMTKCAAGVGVNRKVEKGKDSHGGTGVTNAGAGTSNPATSKAKESQPSTKVGSKRARQSTSDLRDDNNARNGNGKKDTNVQENGFDTSGLNAQVHSRRSSRKKQHVSYTEASEDGNFESSSKRPRQHESFNPTEVKKREVPENGGLFNSNNPASFAACVAGQNGEMRNKASSPPEETVLRNKTKKEQSNVQRKEASESDLDDRKSKADNCSPLDSNFPSNLEISCPDPDFSDFEKDRAEDCFSVNQFWAIFDTTDSMPRFYALVRKVYSPFKLQITWLEPDSDDQGEIDWHDAGLPVGCCKFRLGHSQRTTNRAMFSHQMHCMKGGDKGSYLVYPKKGETWAIFRHWNIGWSSDPKKHSEYQFEYVEVLSDFDENVGIKVTYLGKVKGFVSLFQQTVQNGISLFCVPPNELYRFSHRIPSYKMTGDEREGVPKGSFELDPAGLPNSLFEAGDSGDVKMEGGMLNNGVSCSRQESSKCKVEQSMSNESIRKAKLLESNGAEIASPILRRSMGSNGKRLDNGQASISQYMVREDDKDIGHRDFSEPKGIASTCQTDEKVKTPQKHEKNNYDREILKVRRSPRDLSKKNDLGDAGECTMGKLTDNHSNTNRNKDSRFYQLVGSDHARLNKDCRVVGASCYDFKKRKSEEMFQCDQIWAIYGVRDKRPDIYAQIKKIESSPNFRLHVSELEPCSPPKGLKRTIACGTFKVKKAKSQILPLSSFSHQLKVEPVANDKYEIYPRKGEIWALYKDQTYELTSSNQGRDECHIVEVLADTDKSIQVVVLMPLSSSHPIFKAPRIQRSKTGIIEILKEEVGRFSHQIPAFQHSGEDDASLRGCWVLDPSSVPGFVIQVD. 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05830 1123 MobiDBLite consensus disorder prediction 451 482 - -
Seca1g05830 1123 MobiDBLite consensus disorder prediction 438 488 - -
Seca1g05830 1123 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 1116 - -
Seca1g05830 1123 MobiDBLite consensus disorder prediction 854 880 - -
Seca1g05830 1123 MobiDBLite consensus disorder prediction 300 329 - -
Seca1g05830 1123 MobiDBLite consensus disorder prediction 389 414 - -
Seca1g05830 1123 MobiDBLite consensus disorder prediction 131 155 - -
Seca1g05830 1123 Gene3D DnaJ domain 64 181 IPR036869 -
Seca1g05830 1123 MobiDBLite consensus disorder prediction 141 155 - -
Seca1g05830 1123 Pfam Domain of unknown function (DUF3444) 906 1099 IPR024593 -
Seca1g05830 1123 Pfam Domain of unknown function (DUF3444) 494 700 IPR024593 -
Seca1g05830 1123 SUPERFAMILY Chaperone J-domain 61 132 IPR036869 -
Seca1g05830 1123 SMART dnaj_3 66 123 IPR001623 -
Seca1g05830 1123 MobiDBLite consensus disorder prediction 286 426 - -
Seca1g05830 1123 MobiDBLite consensus disorder prediction 242 264 - -
Seca1g05830 1123 MobiDBLite consensus disorder prediction 330 345 - -
Seca1g05830 1123 PRINTS DnaJ domain signature 103 123 IPR001623 -
Seca1g05830 1123 PRINTS DnaJ domain signature 87 102 IPR001623 -
Seca1g05830 1123 PRINTS DnaJ domain signature 69 87 IPR001623 -
Seca1g05830 1123 MobiDBLite consensus disorder prediction 229 270 - -
Seca1g05830 1123 CDD DnaJ 67 120 IPR001623 -
Seca1g05830 1123 MobiDBLite consensus disorder prediction 346 368 - -
Seca1g05830 1123 Pfam DnaJ domain 67 128 IPR001623 -
Seca1g05830 1123 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05830 Seca-Chr1 161673031 161676402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05830 4 263 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 27.931 1.65e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05830 - - aprc:113861153 1638.62