Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05824 ATGCAACCAACAATTTTAGCAATGGTTTGTAGTCTGGCCCTGGATTTCAGGCCAATGGTTTCTCCAATTTTTCAGTTAATTATTATAATCCATTTGCAAATATTTGCTATCTGTGTAGATGCTCCTATGGAGTGTATTTTTGCTTTCTTAAAATGGCTATGTAGAATTTATTGTTCCTTTTTACTAGTAGAAAATTTAATAGGAAGAGGTGGCTATGCTGAGGTTTACAAGGGTCGCCTCAGAAATGGGCAACTAGTAGCTGTTAAACGACTGAATAAAGGGACTCCAGATGAGAGGACATCAAGCTTTCTATCTGAGTTAGGCATTATTGCTCATGTTAACCATCCTAACACTGCCAAGCTTATTGGATGTGGTGTGGAAGGAGAAACACTTGTCTTTCAACTATCTCCACTGGGAAGTTTAGAATCTCTTCTTCATGGTTCAAATAAAAGCAAATTGGATTGGAGTAAAAGGTATAAAATTGCTATAGGGATAGCTGATGGTCTCCTTTATCTTCATGAGCATTGTGAAAGGCGAATCATTCATAGAGATATTAAAGCAGAGAATATTCTACTCATAGAGAATTTTGAGCCACAGATTTGTGATTTTGGGCTTGCAAAGTGGTTACCAGAACAATGTACACACCATAATGTAGCCAAATTTGAAGGCACATTTGGGTATTTAGCTCCTGAATATTTGATGCATGGCATAGTAGATGAGAAAACTGATGTTTATTCCTTTGGTGTCCTACTTCTGGAGATTATAACTGGGCGTCGGGCTTTGGATAATTTGCATCAAAGTGTTGTGTTATGGGCAAAGCCTTTGCTTGATGCTAATAATATTGAGGACCTTGTTGATCCTTCTCTTGGTGACAATTATGACCGACAACAGATGGATCGTATTGTTTTGACTGCATCTCTGTGTGTTGAGAAGTCTCCTATCTTACGCCCTCGCATGAGTCAGGTTGTTGTACTGCTAAGAGGTGATGACTTTGTCCTGGAATCTGCAAAAGAAAGCCCGAGGCAATATCACCTAAGAATGCACTCAGAGGAGGTACATGATGTGCAAGAAAACAACTCAACAAACCATTTAAGTGATCTCAATTGA 1107 0.3875 MQPTILAMVCSLALDFRPMVSPIFQLIIIIHLQIFAICVDAPMECIFAFLKWLCRIYCSFLLVENLIGRGGYAEVYKGRLRNGQLVAVKRLNKGTPDERTSSFLSELGIIAHVNHPNTAKLIGCGVEGETLVFQLSPLGSLESLLHGSNKSKLDWSKRYKIAIGIADGLLYLHEHCERRIIHRDIKAENILLIENFEPQICDFGLAKWLPEQCTHHNVAKFEGTFGYLAPEYLMHGIVDEKTDVYSFGVLLLEIITGRRALDNLHQSVVLWAKPLLDANNIEDLVDPSLGDNYDRQQMDRIVLTASLCVEKSPILRPRMSQVVVLLRGDDFVLESAKESPRQYHLRMHSEEVHDVQENNSTNHLSDLN. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05824 368 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 137 340 - -
Seca1g05824 368 Gene3D Phosphorylase Kinase; domain 1 59 134 - -
Seca1g05824 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Seca1g05824 368 ProSitePatterns Protein kinases ATP-binding region signature. 67 89 IPR017441 GO:0005524
Seca1g05824 368 PANTHER OS08G0249100 PROTEIN 63 359 IPR046958 -
Seca1g05824 368 Gene3D Transferase(Phosphotransferase) domain 1 137 343 - -
Seca1g05824 368 SUPERFAMILY Protein kinase-like (PK-like) 54 340 IPR011009 -
Seca1g05824 368 Pfam Protein tyrosine and serine/threonine kinase 64 323 IPR001245 GO:0004672|GO:0006468
Seca1g05824 368 ProSiteProfiles Protein kinase domain profile. 61 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05824 368 SMART serkin_6 61 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05824 Seca-Chr1 161576467 161580032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05824 65 332 Receptor kinase-like Gene Family AT1G53420 44.043 4.97e-67 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca1g05824 PK_Tyr_Ser-Thr 7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05824 - - cam:101512181 480.715