Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05810 ATGTGTTTGCCCGAGGCAGAGAGAGAGAGTGAAAGAACCATGGCACTTGAAGCTGTAGTTTATCCACAACCACAAGACCCATTTGGTTATGCAATCAAAGAACTCTTCAACTTCAACAACAACAACAACTTGTTAACAAATGAAGGACCCAAAAATGAAGAGCAAGCAGGTTCTTCTATTTCCACTTTTCTAGAGAACCAAACAGATCAAAATTACCCTTATGGTGGAGATTGGAATTGTTCTCCACAACCATCAATGTTACCACCACAAATGAATGAACTTCATGCTCCTAATCCATCTTCAGAACCTCACAACTTAGATACCTCAAATTCACGACCAAAGAGACGCAGAGCCAAAAGCAGAAAGAATAAGGAAGAAATTGAGAACCAGAGAATGACTCACATTGCTGTTGAGCGCAACAGAAGAAAGCAAATGAATGAGTATCTCTCTGTTCTTCGGTCTCTAATGCCTGACTCTTATGTTCAAAGGGGTGATCAAGCATCTATAATTGGGGGTGCTATTAACTTTGTTAAGGAGCTTGAGCAGAGGCTACAATTTCTTGGTGTTCAGAAAGAAAAAGAAGGGAAATCTGATATAGTTGCAAATTCAAGCATGCCCTTTTCTGAGTTCTTCACTTTTCCACAATACTCAACAAGTGCTAGTGGATGTGATAATAATAACAATAATTGTGCAGCCATGGGTGAGCAAGTTGGTGAGGTTCAATCTAGCATTGCTGACATTGAAGTGACAATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCAAAGAAAAGGCCAAAACAGCTCTTGAAGATGGTGTCTAGTTTGCATGGCATGCGCCTCACAATCTTGCACCTAAATGTCACTACCACAGGGGAAATTGTCCTTTATTCTCTCAGTGTTAAGGTGGAAGATGATTGCAAGCTTGGATCAGTTGATGAGATAGCAACAGCTGTATACCAAATGCTGGATAGGATCCAACAAGAGTCAATGTTGAATTAA 1002 0.4012 MCLPEAERESERTMALEAVVYPQPQDPFGYAIKELFNFNNNNNLLTNEGPKNEEQAGSSISTFLENQTDQNYPYGGDWNCSPQPSMLPPQMNELHAPNPSSEPHNLDTSNSRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQFLGVQKEKEGKSDIVANSSMPFSEFFTFPQYSTSASGCDNNNNNCAAMGEQVGEVQSSIADIEVTMVESHANLKIRSKKRPKQLLKMVSSLHGMRLTILHLNVTTTGEIVLYSLSVKVEDDCKLGSVDEIATAVYQMLDRIQQESMLN. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05810 333 PANTHER MAX DIMERIZATION, MAD 62 329 - -
Seca1g05810 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 192 IPR036638 GO:0046983
Seca1g05810 333 SMART finulus 135 186 IPR011598 GO:0046983
Seca1g05810 333 Pfam Helix-loop-helix DNA-binding domain 130 181 IPR011598 GO:0046983
Seca1g05810 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 180 IPR011598 GO:0046983
Seca1g05810 333 MobiDBLite consensus disorder prediction 67 107 - -
Seca1g05810 333 Gene3D - 114 195 IPR036638 GO:0046983
Seca1g05810 333 MobiDBLite consensus disorder prediction 67 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05810 Seca-Chr1 161426198 161428341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05810 14 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.254 1.07e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g05810 HLH 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05810 - - pvu:PHAVU_007G181900g 444.506