Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05809 ATGAAAAACGATCCAACCAATCTCCACCTATTCTTCTTCCTCCTCATTCTCCCTCTCGCCGCCGCACAAACCCAAAATAATGACTATTCCAACCAAAATCTCAGCCAATTCAACCCTTCCTTCGCCATAATCATAGTCATATTAGTTGCCGCTCTTTTTCTCATGGGCTTTTTCTCCATCTACATCCGTCAGTGCGCTGATACTCCCTCCAACAGCGTTCTCCCCCTCACCCACGCGCGTTCAAGGAGAGCAGCGCGTGGACTTGATCCTGCGGTCATCGAAACGTTCCCGATTCTAGAATATTCCGAGGTTAAGATGCACAAGATTGGAAAAGAAGCATTGGAATGCGCCGTTTGCTTATGCGAATTCGAAGACACCGAAACGCTGCGTTTGATCCCAAAGTGCGATCACGTTTTCCACCCTGAGTGCATCGATGAGTGGTTAGGTTCTCACACCACTTGCCCCGTTTGCCGTGCCAACCTCGTTCCGCAACTTGGCGAGTCCGTTGAGTCACGAGACACCGAAGCTCAAAACGACGCCGTTTCTCTCCAAAATCCACCAGAACAGTCAAACGCGGACGTTGACCGAGTCTTACCTGAGCCTGAAGTGATTCCCGTGGATAAAACTCTGAACCGAAACCGCACACGTGGTTCCCGGTCGAACCGGACGCGCCGTTTCCCGCGGTCTCACTCGACCGGTCATTCGTTGATCCAACCGGGTGAAAACACCGCACGGTTCACTTTGAGACTACCCTTGGAAGTGAGGAAACAGGTAATGAACCGGCAATTGCAACGTGCTAGCAGCTTGATTGTGTTGCCTAGAGAAAGTAGTTCAAGGCAGGGTTATCGAACCGGCGAGGGAAGTAGTAGAGGAAGGTTGAGACGATTGGACCGGAGTTTTAAATCAGACCGGTGGGTCTTCACTCGGAGTTTCAAATCAGACCGGTGGGTTTTTACGATGGCTCCACCGTTCTTAGTTAGGGCATCGTCGATTAAGACCCCGAAGGTGGGTAATGGGGACGGTGAAGGGACCTCTTCCAGCTCCACCGCCCCTATCATGCCGCCGTCAGCCGTTGACTCAGCCCGCCCTCCGGTTTGA 1098 0.5219 MKNDPTNLHLFFFLLILPLAAAQTQNNDYSNQNLSQFNPSFAIIIVILVAALFLMGFFSIYIRQCADTPSNSVLPLTHARSRRAARGLDPAVIETFPILEYSEVKMHKIGKEALECAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLVPQLGESVESRDTEAQNDAVSLQNPPEQSNADVDRVLPEPEVIPVDKTLNRNRTRGSRSNRTRRFPRSHSTGHSLIQPGENTARFTLRLPLEVRKQVMNRQLQRASSLIVLPRESSSRQGYRTGEGSSRGRLRRLDRSFKSDRWVFTRSFKSDRWVFTMAPPFLVRASSIKTPKVGNGDGEGTSSSSTAPIMPPSAVDSARPPV. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05809 365 MobiDBLite consensus disorder prediction 168 193 - -
Seca1g05809 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 164 IPR013083 -
Seca1g05809 365 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Seca1g05809 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 275 - -
Seca1g05809 365 FunFam E3 ubiquitin-protein ligase ATL6 76 164 - -
Seca1g05809 365 MobiDBLite consensus disorder prediction 212 238 - -
Seca1g05809 365 Pfam Ring finger domain 115 158 IPR001841 -
Seca1g05809 365 MobiDBLite consensus disorder prediction 339 354 - -
Seca1g05809 365 SUPERFAMILY RING/U-box 115 164 - -
Seca1g05809 365 CDD RING-H2_EL5-like 115 158 - -
Seca1g05809 365 SMART ring_2 116 157 IPR001841 -
Seca1g05809 365 MobiDBLite consensus disorder prediction 331 365 - -
Seca1g05809 365 MobiDBLite consensus disorder prediction 175 191 - -
Seca1g05809 365 MobiDBLite consensus disorder prediction 215 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05809 Seca-Chr1 161359915 161361012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05809 11 337 Rapid Response to Elicitors AT3G05200 47.647 1.39e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05809 K10664 - gmx:100781706 476.092