Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05804 ATGGCCTTCATTCCAATTCCCTCCTCTTTCAAAACCTCACAACTCTTACTCACACTCATCATCATCCTCGTCCTCATCTTCTTCTTCATAAACCTACCTTCCTCTCCCTCCCTCTTCTCTCCCCCGATTCCCACTCGTAGGTCACTCCTCAGCATCACATCTTGCTCCTCCAACTCCAACTCCAACACACCCGAATCCAATGGCCTCCTCAACTACCACTGCATTTTCCCTCAAAACCACTTCCTCTCCATCCCCACTCTCTCCCTTCTCCTTCTCCTCCATTTCTACATACTCATCAAAACCGCTCAGCACCACTTCTCCGTCGTTACCACCAAACTCGCTTATCACCTCAATCTCTCTCCCAGCATGGCCGCCGTCACCCTCCTTGCCCTAGGTAACGGTTCTCCCGACGTTTTCTCTTCCCTCGCCGCCCTCCGCGCCGGTCAATACCGAACCGGCTTCGGCGCCATACTCTCCGCCGGAGCCTTCGTCTCTGCTCTCGTCGTCGGCTTCGTCGCGATCTACGCCGCGCCTTTTCCAGTCGATCCCGCGCCTTTCGTGAGAGATGTCTTGTTCTACTTGACCGCCGCTTTGTTCCTCTTCTACGTCTATCTTAGTGCTGAGATTTTTCTATGGCAAGCACTTGGATTCGTTGGATTCTACATCTTCTTCGTTGGATTTGTGTTCTATATGGATTTAGGGATGCCGGATCGCAGGGAAAAGAGTTCTGTGGATCTTGAGGGGCAAGAGGAATCGGGTTTCGCCGTTAAAGCTGCGGAATCTCCCCAGGAAGATGAACGCACTTCTGGATTGTGTGCAGGTTTTCGTTTGATTTCTAAAGCATGGGAGCTTCCTGTCTCAACTCTCTTAAAATTGACAATCCCTCAACCAGCACCGTCGCAATGGAGCAGATTTTATGCATCAGCCAATATCGCTCTTTGTCCACTAGCCCTCTTGTATGCCTGCAACTCATTCATGCCATTTGATCATCCCATAGTTTTCCTCCTCCCCAACACCCATTTCCCCCTCTGGTCAGTGGTGCTCATGACAAGCTTCTCTCTTGCATTTCTTCATCTTGTTATAGAAAAAGAACCCCCGAAAACAGAGCATCTGCCTGTGGTGGTTGTGGCATTTGTTATGAGCGTGTTTTGGATATCTACAACCGCCGGAGAACTGGTGAATTGCCTTGAAGCTCTAGGTACACTTCTCAAACTGCCGCAAGCACTCCTAGGTCTTACAGTGCTGGCATGGGGAAATTCAGTGGGGGATCTTGTTGCTGATGTTGCAGTTGCTAAAGCTGGTCATCCAGCAATGGCAATGGCTGGATGCTTTGCTGGACCAATGTTTAACATGCTTGTTGGTCTTGGAACTGCTTTGGTCATACAGACGACCAATGTATATCCTAGAGCCTATCAGCTTAATTTCCACGTTGGTATTGTGATCGCATTTGTTTTCTTGCTTTTAAGCCTCATGGGGTCTCTCTTGGTGATCACTTGGTGCAGATTCCGAGTCCCTAGGTTTTGGGGATTCTGTCTGGTAGGCCTTTATATAGCTTTTATGGCAGCAAGTTTGCTAATAGCCATGTTTTCGGGGTGA 1596 0.4925 MAFIPIPSSFKTSQLLLTLIIILVLIFFFINLPSSPSLFSPPIPTRRSLLSITSCSSNSNSNTPESNGLLNYHCIFPQNHFLSIPTLSLLLLLHFYILIKTAQHHFSVVTTKLAYHLNLSPSMAAVTLLALGNGSPDVFSSLAALRAGQYRTGFGAILSAGAFVSALVVGFVAIYAAPFPVDPAPFVRDVLFYLTAALFLFYVYLSAEIFLWQALGFVGFYIFFVGFVFYMDLGMPDRREKSSVDLEGQEESGFAVKAAESPQEDERTSGLCAGFRLISKAWELPVSTLLKLTIPQPAPSQWSRFYASANIALCPLALLYACNSFMPFDHPIVFLLPNTHFPLWSVVLMTSFSLAFLHLVIEKEPPKTEHLPVVVVAFVMSVFWISTTAGELVNCLEALGTLLKLPQALLGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGTALVIQTTNVYPRAYQLNFHVGIVIAFVFLLLSLMGSLLVITWCRFRVPRFWGFCLVGLYIAFMAASLLIAMFSG. 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05804 531 Gene3D - 307 524 IPR044880 -
Seca1g05804 531 Gene3D - 119 246 IPR044880 -
Seca1g05804 531 Pfam Sodium/calcium exchanger protein 88 229 IPR004837 GO:0016020|GO:0055085
Seca1g05804 531 Pfam Sodium/calcium exchanger protein 374 524 IPR004837 GO:0016020|GO:0055085
Seca1g05804 531 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 275 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05804 Seca-Chr1 161318900 161322958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05804 8 530 Antiporters AT1G08960 68.199 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05804 K13754 - gmx:100775437 767.303