Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05788 ATGCACAGAGATATTAAGGGGGCCAATATTCTTGTAGATAATAAAGGGTGCATAAAACTTGCAGATTTTGGAGCATCCAAACAGGTCGTTGAGCTGGCTACCATTTCCGGTGCCAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGGCATAGCTTCTCTGCTGACATATGGAGCGTGGGTTGTACTGTGATTGAGATGGCTACTGGAAAGCCTCCCTGGAGCCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACTAAGTCTCATCCACCAATCCCTGATCATCTCTCTGTTGGAGCAAAAGATTTTCTGCTAAAGTGTTTGCACAAGGAACCATTTTTGAGGCCATCAGCATCAGAACTTCTGCAGCATCCCTTTGTTACCGGTGAACATATGGATTCTCTTCCTACGTCATCTACTGTCATGGAAAATCTTGGGGCTTCTTCACCGTCCCATGCCCCAAATGTTGAATCCTTACTTTGTGGCTCAACAATAAATCCCCTGGATTCGGGAAATAAACAGTCATGGGGAATGAGCAATGATGATGACATGTGTGAGATTGATGACGAAGAAGAGTTCTCAGAGTGTGATATCAAATGCAAACCATTGATGTCAGATAACATTGAGAGCTTCAACCCGATGTCTGATCCCTCTGATGATTGGGGGTGTAAATTTGGTGCAAGTCCAGAACTGGAACAAAGAGAAGGTTTTGACACTGGTGAAAGTTACATGCCATCTGGTCAGTCGGGGGCTAACGAGGGGCAGAAAGATTTCTCCTTTCCATCTGTGACACCTCAGACACCATCCCTGTCAGAGGAAGATGATGAGCTCACAGAGTCAAAAATTAAAGCCTTTTTGGATGAGAAGGCTCTTGAACTGAAAAAACTGCAGACACCTTTATATGAAGAATTTTACAACAGTTTAAATACATCTTGTTCTCCGAAGGTGATTGATAGCATAAGTGATGATACTGCTGCTCGAAAGTTCTTGAAATTACCTCCTAAAAGCAGGTCACCTAGTCGGGTACCAATTAGCACTCCATCTAAAGCAGTTGAAAATGCTGGAAGTCCTGGAAGTAATGGCAGGTCCTCATCAACTGTTGGCAATGTAAATAATCATGGCTCACAGGATATACCAGCATCTCCCCTTAATGAATTTAAAGGACTGATAGTTGACTCCCAGCAGGAGCCCAATAGCCCAAGTATAAACTTTTCTGAGAGACAAAGGAAGTGGAAAGAAGAGCTCGACCAGGAGCTCGAGAGAAAGCGAGAAATGATGCGCCAAGCTGGTATGGGGGGAAAGACATCTTCACCAAAGGATCGAGCTTTACATCGGCAGAGAGAACGGACAAGATTTGCTTCTCCCAGCAAATAA 1410 0.4426 MHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSVGAKDFLLKCLHKEPFLRPSASELLQHPFVTGEHMDSLPTSSTVMENLGASSPSHAPNVESLLCGSTINPLDSGNKQSWGMSNDDDMCEIDDEEEFSECDIKCKPLMSDNIESFNPMSDPSDDWGCKFGASPELEQREGFDTGESYMPSGQSGANEGQKDFSFPSVTPQTPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSCSPKVIDSISDDTAARKFLKLPPKSRSPSRVPISTPSKAVENAGSPGSNGRSSSTVGNVNNHGSQDIPASPLNEFKGLIVDSQQEPNSPSINFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDRALHRQRERTRFASPSK. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05788 469 MobiDBLite consensus disorder prediction 254 283 - -
Seca1g05788 469 ProSiteProfiles Protein kinase domain profile. 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05788 469 MobiDBLite consensus disorder prediction 249 288 - -
Seca1g05788 469 SUPERFAMILY Protein kinase-like (PK-like) 1 159 IPR011009 -
Seca1g05788 469 Gene3D Transferase(Phosphotransferase) domain 1 1 166 - -
Seca1g05788 469 MobiDBLite consensus disorder prediction 450 469 - -
Seca1g05788 469 MobiDBLite consensus disorder prediction 403 417 - -
Seca1g05788 469 MobiDBLite consensus disorder prediction 351 391 - -
Seca1g05788 469 MobiDBLite consensus disorder prediction 434 469 - -
Seca1g05788 469 Pfam Protein kinase domain 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05788 469 SMART serkin_6 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05788 469 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 161 - -
Seca1g05788 469 MobiDBLite consensus disorder prediction 342 422 - -
Seca1g05788 469 Coils Coil 420 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05788 Seca-Chr1 161229911 161235958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05788 1 469 MAP Kinase Kinase Kinase AT1G54960 52.475 8.96e-145 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca1g05788 Pkinase 3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05788 K20606 - gmx:100807537 791.186