Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05784 ATGTTTTCTTCGTCATTAGAAGAAAGCAAAAGCGTTGGAGAAAAAATGTCAGATTCACAGTCGAATTCAGCGATTTTCAGTGTTCGTATTGTCTCCATCGACTATTACATGGCACCGCCTATCCCAGGCGCCGATATCTGTTACAGCAGCTTCCATGGTGGAAAAGTGAACGAGGTTCCAGTAATTAGAGTGTATGGTTCAACTCCTGCTGGCCAGAAGACTTGCTTGCACATACATGGAGCTTTACCTTATATGTATGTGCCGTGTTCAGATATACCACTTCAACTAGACCAAGAAGGTGATGCATACACCTATAAGCTAGCTGCTTCTCTCGAGAAAGCCTTGAAGCTAAAAGGCAATGCTGGTTCAACGAGACAACATGTACATGGCTGCAGCCTTGTACGAGCAAGGAAATTTTATGGCTATCATTCATTTGAAGAATTATTCGTAAAGATATACCTATATTATCCTCAAGATGTCTCCCGTGCAGCTAATCTTCTCTTGGCTGGTGCCGTTCTTGATAAAGGTTTACAGCCACATGAATCACATATTCCCTTCATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCATTTGCACCTATCAAAAATGAGGTTCCGTCATCCCATACCAGATTCTTCTCACAAGAAAACAATTATTGATAGCCAGCATAGAAAGGCAGATCCGGATACTGATGCATGTTTAGAGTCAAAAGTGTGGATGTCTTCCATGATCCCATCTGACTGGATGTGGTTAGCCCCTAGTGAATTTGGTGCTTTGTCAAATGATAAGACTCACTGCCCTAAACGTCAAAGCATCTGTGAGCTTGAAGGAGATACTTCTGTAGATGAGATTCTCAATCAGCAGTTTAAAATGTATTCATCTCTCTCACAAACATGCTCAGATGTCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAGCAAAAACGGACTGGGATTCGTGAAGCTACCATGCCTTCTGATCCTGGCAAACCACTTCCAGAAGATGTGATGAAACTTCTCTCTGTCGGTCTTGACTTTGAGAAAAGACTTATTGAATTGTGCAGTGAAGCTGAAACCTCTTTACTCTGTACTCCTTCTGAGAGGGAATTTAGAGAAACAGACATAATAGGTTCAGCATCACCACCAGCTTCATTGTGTGAAAAAGCCAAATTGCTTGAGGAAGGGACTGACACAGGTCTCAAATTGTTGACTATTGATGAAATGCAAAGATCTGAAAAGATTGGAATGTTGGACATAAAGGCTGCTGATAAGGAAGCACAAAATCTTCTTAAGTGGCTTGCAACTTCTCAAGCTGCAGAGGATATAAACTCTGATGATGAACTTCTTTGTGAAACGATCTTGAGTCCCTTGTTACCTGCTGCAACAATTGATAAGGTGCTGGAGAAAGCTAATATGGCTTATGAGAGTGAGTCTCAGAAGGAGTGTCAGGATATTCTAGATTCAATTGATGATATGCTTGAGTTGGAGTTTCCAAAGGAAAAGCCTTCTTGTTCTGTAGATCACAATAGTCCTGTTAAGGCTTCATCAAACAGTATGATACCCCAAGTTGATGGTTCTAATGATGATGAATGCTCTAATGATGATGAATGCTCAAGTCCACGCGCTAGTTTGACCGGAACCTCTTCTGCAGTAGAGATAAACAGTGAATACAAAAGGGCTTCTGAGTGCCATGTGCACAATACTGACACAAATACAGTTAGTACAGATAAAACGAATAAACAATGGGGGTCTTTGCCTTTTTCCATGACCAATAAGGTTAATAATGATGGAGAGCATGCTACTTCACATTTGACCCATCCATTTGAAAGTGAAACTGGAGATTCTCCTCATTCAGATTACTTAACCAGAAGAAATAATGCTTGTATTATTAGAAAAGTGGGCAAAGGTGCTTCAGATTCAAAAGAAGTACATGGATTGGCTAGTTGCTCATTGCGGGACTTGATGAGGCGAAAGCGATCCTATCAAGTTGAACATGCTGAACGTGAAACTGGAACTACTAAAAAACTTCTTTTAAATAGGCATGAGGGCCTTCAGAAAAAACAACTGGATTTGAGAAAAATGCAAACCAATGAAGAAGAAACAGAGTGCCATAAAGATTGTGATCTTAAAGTGAGCAATCGTGGTAATTTAGTTTGTGGGAAATTGTCACTACCTGCTGGCAGTAATAGGCTTTTACAGGCTAGTATGCCAAGAGATGAATGTTTTGATCCCCATGAAATGGAGTGTCTAGAAGCAAGTATGGTGTTGAGGAACTCCACAAATGGAGGGTCTTCTTTAATGAGTGAAGGACCAGGCATCCATAAACTCGAAACTTTATGTTCTATTGATTCCATAGACCAATCTATAGCTTGCAGGGATAAAAACATTTTGGTTGGAACAGCTTATGCAAAACCTGTAGCTTCTGATGCCTATACCTCAAATCCGATTTTAGACACTCAGTTGACGATGGATGCTGATCATAATGTCAGAGCTCCTGAGAGGAGTCAGCATACTGATTCTGCTGCTTCAAGTAGTGTACAGAACTCATCCTTTGATGATAAAATGTCAGGCAAACATTATTGCATGGATCAAAGTTCTTGTATATGTTTTATGCAATGTGATCAGATGAAGTTTTATGAGCATTCTGTGGGCATAAGTGCTGCAAGTGACACACAAGTATTGCTAAGTGAAAAAGTTGATAATCAAAAGATGGGTAAAAATTTGTTGCATGAGACCATTGGCTCAAAATCCATTGCTGATGACATGAAGGGCAATCAGGTGAAATTAAATGAAATAACCATAAGCAAGAATCTTGAAAGTAATCTTCCCTTGCCAACTGTCTCTAACACCCATTTACATTTGGATGAGGACAGCTGTGTTGAACTGCCAGGGAATCCTCTGGATGTTTTCCTTCCATTTTCTGGAAGGGATTCCCCAAAAGAGAAGGAAACTTGGGACAACTGTGTTTCAATTAAAACCCACAGATCTAATGGGACAAAGGGTATTACAACTCACTATCAAAACGATGGCTCTCACCTCTACTTATTAGCACCTAATATTTTGCCTCCTTCTGTGGGTTCCGTGCAGAGATGGCTATATTATAATGAGAGAGATCAAATGCATCAAGAACCTGATACAGAGGACAAGGATGTACCTAATTGTGCTTCTGCACCTCCTTGTGGGCCTGAGCTGTATCAAGATGCTGGTTCAAAACAGAAGCCTCCATGCATTAGTGAAGGACAAACAGAAAGAGTAAAAGCAAGTCTAGATGGCTCACAAGATATTTCTCAGATATCAGGCCCTGATGGGAAATCAAGTTTTACTCCCCTTAGTCAAATCGGATTTCGAGACCCTGCAAGTGTTGGCCATGGACAGCAATTGACATTACTTAGTATAGAGGTTCTTGCAGAATCTAGAGGAGACCTTTTACCTGATCCTCAATTTGATGGCATCAACATTGTAGCTCTTGGTTTTCAGAATGATAGTGATTCTATTATTGAAGTTCTTGTTCTTTTGCATTGTAAATTTGACCCTTGTCAGAGAAGTTATGATGGTCTATCAGGCTGCAAAGTATTGGTCTTCACTGATGAGGAGCACTTGTTGAAAGAATTTATAAAGATTGTGTCTTCATCTGATCCAGATATTTTGATGGGTTGGGATGTTCAGGGGAGTTCTCTTGGTTTTCTAGCAGAAAGGGCTTCACATCTTGGTTTAGGATTACTTAATGGTTTGTCTCGCACTCCATCTGATTCTTGGATTGCTTCTGAAGACACCAAAACTTCTGAGAAAGGTATTGTGGATCTGGACATCCCTGATACCCCCAGTCTAGATAGTTGTACACAAGAAAGTTCAATAATTGAGGATGAATGGGGACGGACACATGCCAGCGGAGTTCATGTAGGTGGCAGAATTGTCCTTAATGTATGGCGATTGATTCGTGGAGAAGTTAAGCTGAATTTGTATTCAGTTGAAGCTGTAGCTGAAGCTGTATTGAGGCGGAAAATTCCTTTATTTCATCACAAGGTGCTGACAAAATGGTTTTCAAGTGGTCCTGGACGAGCAAGACATCAGTGTATGAAATATCTTATAGAGAGAGCAAAGCTGAACCTTGAGATATTAAACCAACTTGATATGGTGAATCGAACATCAGAACTTGCTCGTGTCTTTGGCATAGACTTTTTCTCTGTTCTCTCTCGAGGTTCACAATATCGTGTTGAATCCATGTTTTTGAGGTTGGCCCATACACAAAACTATGTTGCTATCTCACCTGGAAAACAACAGGTTGCTTCTCAACCTGCTATGGAATGCCTGCCGCTAGTGATGGAACCAGAGTCAGGATTTTATTCAGATCCTGTTGTTGTTCTTGACTTCCAATCTTTATATCCATCAATGATAATTGCATACAACCTTTGCTTTTGTACATGTCTTGGCAAAGTTGTGGCATCAAAGGCTAACACACTTGGGGTTAGTTCATTTTCACCAGAGCAACATGTTCTGCAGGATCTAAAAGACCAAATCTTGCTCAGTCCAAATGGTGTTATGTTTGTACCTCCCAAGGTTAGAAGAGGGGTTCTACCTCGCTTATTGGATGAAATCTTATCAACTAGAATAATGGTAAAACAAGCAATGAAAAAGTTGTCTCCTTCAGAGCAAGTTCTTCAGCGGATATTTAATGCAAGACAACTTGCTTTGAAGCTCATATCAAATGTAACATATGGTTACACTGCTGCTGGATTTAGCGGTCGGATGCCTTGTGCAGAACTTGCAGACAGTATTGTTCAATGTGGCCGTAGTACACTGGAAAAGGCTATATCATTTGTGAATCTACATGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAAAGGACGCACTATCAAAGAGTCCTTCCAAATTGGGAGTGAGATTGCTTCTACTATCACTGCTATGAATCCCAGTCCTGTCACCCTGAAGATGGAGAAAGTTTATCATCCGTGCTTCCTCCTTACTAAAAAGCGTTATGTTGGCTACAGTTATGAAAGCCCTGATCAAATTGAACCTGTTTTTGATGCTAAAGGTATTGAGACAGTTCGCAGGGATACTTGTGGTGCAGTTGCAAAGACAATGGAGCAGTCTTTGAGACTCTTTTTTGAACATCGAGATTTATTGGAGGTGAAGACTTATTTGCAGCGTCAGTGGAAGAGGATTCTTTCAGGCAGATTCTCCCTTAAAGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCTACTAAGGCAATGGGGGTTGATCCTAGGGCAGAACCACATTATGCTGAGAGAATACCTTACATTGTAATCCATGGAGAGCCCGGAGCACGCCTGGTTGATATGGTTGTGGATCCATTGGAAGTTTTGGCAATTGATTCCCCATTTAGAATAAATGATTTATATTACATCAATAAACAAATAATACCAGCTTTACAGCGGGTGTTTGGGCTTGTTCGTGCTGACCTGAACCAGTGGTTTGCAGAGATGCCCCGCCCTATAAGGGAAGCTTCTTCAAAGCATACATTCGCTCCAAACTCCCATCGAACCAGAATTGATTCTTACTATCTCTCAAAACATTGTGTACTGTGTGGTGGGTTGGTCCAGGCATCAGCTCGTTTATGTAGTCAATGTTCTGAAAATGAAGTAGCTGCTGCGACAGCAGTGATTAGTAAGACTTCAAAGTTAGAGCAAGAGATGCAACGCCTTGTTGCTATATGTCACCATTGCGGAGGCGGGGATAGGCTTCTCGAAAGTGGTGTTAAGTGCACGTCCATTTCTTGCTCGGTGTTCTATCAGAGGCGGAAAGTTCAGAAAGAACTACTAGCTGCCACCAATGTTGCTGCAGGTAAAGGCTTCTATCCAAGATGTACGATGGAATGGTTCTGA 5979 0.4104 MFSSSLEESKSVGEKMSDSQSNSAIFSVRIVSIDYYMAPPIPGADICYSSFHGGKVNEVPVIRVYGSTPAGQKTCLHIHGALPYMYVPCSDIPLQLDQEGDAYTYKLAASLEKALKLKGNAGSTRQHVHGCSLVRARKFYGYHSFEELFVKIYLYYPQDVSRAANLLLAGAVLDKGLQPHESHIPFILQFLVDYNLYGMGHLHLSKMRFRHPIPDSSHKKTIIDSQHRKADPDTDACLESKVWMSSMIPSDWMWLAPSEFGALSNDKTHCPKRQSICELEGDTSVDEILNQQFKMYSSLSQTCSDVNMVQSLVPIWEEQQKRTGIREATMPSDPGKPLPEDVMKLLSVGLDFEKRLIELCSEAETSLLCTPSEREFRETDIIGSASPPASLCEKAKLLEEGTDTGLKLLTIDEMQRSEKIGMLDIKAADKEAQNLLKWLATSQAAEDINSDDELLCETILSPLLPAATIDKVLEKANMAYESESQKECQDILDSIDDMLELEFPKEKPSCSVDHNSPVKASSNSMIPQVDGSNDDECSNDDECSSPRASLTGTSSAVEINSEYKRASECHVHNTDTNTVSTDKTNKQWGSLPFSMTNKVNNDGEHATSHLTHPFESETGDSPHSDYLTRRNNACIIRKVGKGASDSKEVHGLASCSLRDLMRRKRSYQVEHAERETGTTKKLLLNRHEGLQKKQLDLRKMQTNEEETECHKDCDLKVSNRGNLVCGKLSLPAGSNRLLQASMPRDECFDPHEMECLEASMVLRNSTNGGSSLMSEGPGIHKLETLCSIDSIDQSIACRDKNILVGTAYAKPVASDAYTSNPILDTQLTMDADHNVRAPERSQHTDSAASSSVQNSSFDDKMSGKHYCMDQSSCICFMQCDQMKFYEHSVGISAASDTQVLLSEKVDNQKMGKNLLHETIGSKSIADDMKGNQVKLNEITISKNLESNLPLPTVSNTHLHLDEDSCVELPGNPLDVFLPFSGRDSPKEKETWDNCVSIKTHRSNGTKGITTHYQNDGSHLYLLAPNILPPSVGSVQRWLYYNERDQMHQEPDTEDKDVPNCASAPPCGPELYQDAGSKQKPPCISEGQTERVKASLDGSQDISQISGPDGKSSFTPLSQIGFRDPASVGHGQQLTLLSIEVLAESRGDLLPDPQFDGINIVALGFQNDSDSIIEVLVLLHCKFDPCQRSYDGLSGCKVLVFTDEEHLLKEFIKIVSSSDPDILMGWDVQGSSLGFLAERASHLGLGLLNGLSRTPSDSWIASEDTKTSEKGIVDLDIPDTPSLDSCTQESSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVEAVAEAVLRRKIPLFHHKVLTKWFSSGPGRARHQCMKYLIERAKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYVAISPGKQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVASKANTLGVSSFSPEQHVLQDLKDQILLSPNGVMFVPPKVRRGVLPRLLDEILSTRIMVKQAMKKLSPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLKGRTIKESFQIGSEIASTITAMNPSPVTLKMEKVYHPCFLLTKKRYVGYSYESPDQIEPVFDAKGIETVRRDTCGAVAKTMEQSLRLFFEHRDLLEVKTYLQRQWKRILSGRFSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMGVDPRAEPHYAERIPYIVIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLVRADLNQWFAEMPRPIREASSKHTFAPNSHRTRIDSYYLSKHCVLCGGLVQASARLCSQCSENEVAAATAVISKTSKLEQEMQRLVAICHHCGGGDRLLESGVKCTSISCSVFYQRRKVQKELLAATNVAAGKGFYPRCTMEWF. 1993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05784 1992 CDD DNA_polB_zeta_exo 1130 1380 - -
Seca1g05784 1992 FunFam DNA polymerase 45 211 - -
Seca1g05784 1992 Pfam DNA polymerase family B, exonuclease domain 70 225 IPR006133 -
Seca1g05784 1992 Pfam DNA polymerase family B, exonuclease domain 1133 1263 IPR006133 -
Seca1g05784 1992 ProSitePatterns DNA polymerase family B signature. 1625 1633 IPR017964 GO:0000166|GO:0003676
Seca1g05784 1992 FunFam DNA polymerase zeta 1525 1584 - -
Seca1g05784 1992 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 20 1985 IPR030559 GO:0006281|GO:0016035|GO:0019985
Seca1g05784 1992 MobiDBLite consensus disorder prediction 1046 1115 - -
Seca1g05784 1992 MobiDBLite consensus disorder prediction 605 625 - -
Seca1g05784 1992 PRINTS DNA-directed DNA-polymerase family B signature 1623 1631 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca1g05784 1992 PRINTS DNA-directed DNA-polymerase family B signature 1458 1471 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca1g05784 1992 PRINTS DNA-directed DNA-polymerase family B signature 1567 1579 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca1g05784 1992 FunFam DNA polymerase 1140 1441 - -
Seca1g05784 1992 Gene3D Palm domain of DNA polymerase 1444 1689 IPR023211 -
Seca1g05784 1992 Pfam DNA polymerase family B 1399 1846 IPR006134 GO:0000166|GO:0003677
Seca1g05784 1992 Pfam C4-type zinc-finger of DNA polymerase delta 1891 1964 IPR025687 -
Seca1g05784 1992 SUPERFAMILY DNA/RNA polymerases 1445 1858 IPR043502 -
Seca1g05784 1992 Gene3D - 1700 1863 IPR042087 -
Seca1g05784 1992 MobiDBLite consensus disorder prediction 837 859 - -
Seca1g05784 1992 MobiDBLite consensus disorder prediction 608 624 - -
Seca1g05784 1992 Gene3D DNA Polymerase, chain B, domain 1 45 211 - -
Seca1g05784 1992 CDD POLBc_zeta 1406 1854 - -
Seca1g05784 1992 Gene3D - 1165 1441 IPR036397 GO:0003676
Seca1g05784 1992 MobiDBLite consensus disorder prediction 841 859 - -
Seca1g05784 1992 MobiDBLite consensus disorder prediction 514 533 - -
Seca1g05784 1992 Gene3D Helix hairpin bin 1525 1584 - -
Seca1g05784 1992 SMART polmehr3 1131 1637 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca1g05784 1992 SUPERFAMILY Ribonuclease H-like 43 1404 IPR012337 -
Seca1g05784 1992 FunFam DNA polymerase 1700 1868 - -
Seca1g05784 1992 MobiDBLite consensus disorder prediction 506 555 - -
Seca1g05784 1992 MobiDBLite consensus disorder prediction 1091 1115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05784 Seca-Chr1 161167437 161189690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05784 54 210 Core DNA Replication Machinery Family AT5G63960 25.926 6.84e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05784 K02350 - gmx:100777934 3107.78