Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05780 ATGGCACCTACAAGGAAACCTAGGAGTATGAACAAGCGGTTTTCAGGTTTGAATGAGATTTCGCCTGAGAAAGATGGAGTTAGCTCAAATAAAAAAAAGCAAAGGAAGAAAAAGCTGTCTGATAAATTGGGATCTCAATGGAACAAGGAGGAACTAGAGAGGTTTTATGAAGCGTACAGGAAGTACGGGAAAGACTGGAAGAAGGTGGCTGCAGTTGTACGCAACAGGTCTGTTGAAATGGTGGAGGCTCTTTACAATATGAATCGGGCATACCTATCTCTGCCAGAGGGGACAGCTTCTGTTGTTGGCCTAATTGCAATGATGACAGATCACTATAATGTGCTGGAAGAGAGTGACAGTGAAAGGGAGAGCAATGATGCTTCAGGATCTGGAAAACCTATGAAACGAAAGCGTAGAAAAATTCAGCTTAGCGTAGAAAAAGATTCTGTCCAGTCTCCATTGATTGCTTCAAATGATGGTTGCCTCTCTCTTTTGAAGAGAAGACGATTCGATGGCAGCCAACCTCGAGCAGTTGGGAAAAGGACACCTCGCATCCCAGTTAACTACTCTTATAAGAAAGATGACAGGGAAAATTATTTTTCACCTAATAAAAGAAGGCTGAAGTCAGCTTTTGATGATAATGATGATGAAGTTGCACATGTCGCAGCTCTGGCATTAACTGAGGCTGCACAAAGAAGTGGCTCTCCCCAAGTATCTCAAATGCCATACAAAAGATCAGAGCAGAAGCCCTCTCCTGTTGGGACCTGGGGAAGAATGCACCAAGAGTCTGAGACAGTTCCTGGCAAGTTTTATGACACTTATGTGGATGAAGAGTGCTTGGAAGGTAGCATAGAAAGCAGGGGAGCTGAAAACGGCGAATATGCTAGAGCTGCTAGTTCCTTGATGAATGTGGAAGGCATAGGCACTGTTAAAGTTCATCAGAAAGGGAAAAAAAATTATGGAAAGAAGGAAAGAGGGGAAACTGTTGGAAATCATCTTCTTGATGAGGGTGGAGAAGCATGTAGTGGCACTGAAGAAGGACTTAATTTTAGTTTGAAGGAAAAGGTTGATATTGAGGTTACTAAGGCCAAACCAGAGCAATTCTCACTAAAAGGTCAGAGGAAAAGAAGCAAAAAACTTTTCTCTGGAGATGAAAGCTCTGCCTTGGATGCTTTGCAAACTTTGGCTGATTTGTCTCTAATGATACCGGCGTCTACAATGGAATCTGAATCATCAGTCCAATTGAAAGAAGAAAAAATGACTGTTGATAAAGATGAAAAGTCTGCTTTACCTGAAGGCACATCAACAAGCCAAAACAGAGATAAAATTAAACTCCCAGGTTTGAAACAAAAGATTGTTCATGCAGTCCATGGAGTTCAGGTTTCAACCTCCAAAAAATCAAAACTTGGAGGGGGATCAGTAGATGATGCTAATGCTCTCTTTGAATCAAAAGAGCAGTTTACCTCTGCTGATAGAACATGGAAAAGAAAGCGCAAATCCATGGTTTCAAAGGTAGCAAATGCAAAGCTTGGTTTTTATCTAAGTGATCCCTTGAATAATGAGGTTGTAGATGAAGAGAATAAGCCAGTGATTATAGGAAAACACACTGACACTGATCAGATTTTCACTCTGGCAAAACAATTGAAGTCAGTCAGATCATCAGAAAGTTCCCTGTGTAGTGACCAGAAAGATTTGAGAGTGTCAACTGCAGAAATTCTACCTGTAAAAGAAGTCAGTTCATCTACTAAACAAAGAAATAGACATAAGATGAGTTCACAGAAATCGTTCATGCCTAAAGAGAAATCTTCTGAGAACATATTGAAAACTCACCCTAATAAGTATTTGACCCCTGTCCAAGATAGGGCATTATTTATAAAGGAAAAGCTTTCAGGTTGCTTGTCATCTTATATGCTTCGCAGATGGTGTATGTTTGAATGGTTTTATAGCGCAATCGATTATCCGTGGTTTTCCAAAAGGGAGTTCATGGAGTACTTAAATCATGTTGGTCTAGGGAATATCCCGAGGTTAACACGTGTTGAGTGGAGTGTCATAAAAAGTTCCCTTGGCAAACCTCGCAGGTTTTCTGAACACTTTCTCCATGAAGAAAGAGAAAAACTTGAACAGTATCGGGAATCTGTTAGGAAACATTACACTGAACTGCGGACTGGTATGAAAGATGGACTTCCAACGGATTTAGCTAAACCTTTATATGTTGGACAACGAGTGATTGCTCTTCACTCAAAAACAAGAGAGATTCATGATGGAAGTGTGCTTACAGTTGACCATGAGAAGTGCAGGGTTCAGTTTGACCGTCCTGAATTGGGTGTTGAATTTGTCAAGGACATTGATTGCATGCCTTTGAATCCACTGGATAATTTGCCAGAAGCTCTGAGGAGGCAGATTGGTGCTGCTAAAGTACCTTGTATGAGTAAAGAACCACATATGAAAGGAAATTCAAGTTTTGGGGGCTGCGTGACATGTGCTTCAGATGGACCTTTGGGGAAGGCACCCACCTTGTCAAGTACTTTGGCTAAACAGGAAAAGGCTGATGTTAACCCTTCAGTTGCCCAAACAAAGGCTGGTGTTATTGATCACTTCTATACACAACAAGCAGTGTATACTCAACCTTGTATAGGGACAAATGATCAAGCTAAGGAAGCTGACATACATGCCCTTTCTGAGCTGACGCATGCTCTAGATAAAAAGGAGAGATTGTTGATGGAACTTAAAAATGCAAATGACATGATGGAAAATCAGAATGACACAGACTGCTTCAAAGATTCAGATGCTTTCAGGAAGCATTACGCCACGGTACTTGTACAGCTAAAGGAAGCCAGTGGACAGGCATGTGGCTTCCATGGATTATTATTTGTTATTACAACAGTCTGCCTCGACATTGAAAGAACTTATGATTGA 2916 0.4102 MAPTRKPRSMNKRFSGLNEISPEKDGVSSNKKKQRKKKLSDKLGSQWNKEELERFYEAYRKYGKDWKKVAAVVRNRSVEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSERESNDASGSGKPMKRKRRKIQLSVEKDSVQSPLIASNDGCLSLLKRRRFDGSQPRAVGKRTPRIPVNYSYKKDDRENYFSPNKRRLKSAFDDNDDEVAHVAALALTEAAQRSGSPQVSQMPYKRSEQKPSPVGTWGRMHQESETVPGKFYDTYVDEECLEGSIESRGAENGEYARAASSLMNVEGIGTVKVHQKGKKNYGKKERGETVGNHLLDEGGEACSGTEEGLNFSLKEKVDIEVTKAKPEQFSLKGQRKRSKKLFSGDESSALDALQTLADLSLMIPASTMESESSVQLKEEKMTVDKDEKSALPEGTSTSQNRDKIKLPGLKQKIVHAVHGVQVSTSKKSKLGGGSVDDANALFESKEQFTSADRTWKRKRKSMVSKVANAKLGFYLSDPLNNEVVDEENKPVIIGKHTDTDQIFTLAKQLKSVRSSESSLCSDQKDLRVSTAEILPVKEVSSSTKQRNRHKMSSQKSFMPKEKSSENILKTHPNKYLTPVQDRALFIKEKLSGCLSSYMLRRWCMFEWFYSAIDYPWFSKREFMEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLHEEREKLEQYRESVRKHYTELRTGMKDGLPTDLAKPLYVGQRVIALHSKTREIHDGSVLTVDHEKCRVQFDRPELGVEFVKDIDCMPLNPLDNLPEALRRQIGAAKVPCMSKEPHMKGNSSFGGCVTCASDGPLGKAPTLSSTLAKQEKADVNPSVAQTKAGVIDHFYTQQAVYTQPCIGTNDQAKEADIHALSELTHALDKKERLLMELKNANDMMENQNDTDCFKDSDAFRKHYATVLVQLKEASGQACGFHGLLFVITTVCLDIERTYD. 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05780 971 Pfam DIRP 646 746 IPR033471 -
Seca1g05780 971 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 77 IPR017930 -
Seca1g05780 971 SMART sant 43 91 IPR001005 -
Seca1g05780 971 SMART DIRP_2 647 748 IPR033471 -
Seca1g05780 971 MobiDBLite consensus disorder prediction 231 260 - -
Seca1g05780 971 FunFam Protein ALWAYS EARLY 3 isoform A 3 99 - -
Seca1g05780 971 MobiDBLite consensus disorder prediction 231 246 - -
Seca1g05780 971 SUPERFAMILY Homeodomain-like 41 90 IPR009057 -
Seca1g05780 971 MobiDBLite consensus disorder prediction 409 440 - -
Seca1g05780 971 MobiDBLite consensus disorder prediction 412 430 - -
Seca1g05780 971 PANTHER LIN-9 1 949 IPR010561 GO:0006351|GO:0017053
Seca1g05780 971 Coils Coil 892 922 - -
Seca1g05780 971 MobiDBLite consensus disorder prediction 1 43 - -
Seca1g05780 971 Gene3D - 5 99 - -
Seca1g05780 971 ProSiteProfiles SANT domain profile. 42 79 IPR017884 -
Seca1g05780 971 MobiDBLite consensus disorder prediction 116 132 - -
Seca1g05780 971 Pfam Myb-like DNA-binding domain 45 82 IPR001005 -
Seca1g05780 971 MobiDBLite consensus disorder prediction 116 143 - -
Seca1g05780 971 Coils Coil 699 719 - -
Seca1g05780 971 MobiDBLite consensus disorder prediction 578 602 - -
Seca1g05780 971 CDD SANT 47 81 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05780 Seca-Chr1 161142252 161152399 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca1g05780 DIRP 4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05780 - - gmx:100789533 1228