Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05778 ATGTTTGCTTCAGTAGGGGATACGGGATATGAGGGCACTGGAGTTTCAGGACCCGGTTTGATTCCAAAGCGGTTTGTCTGGCCTCATGGGGGAAGAAGGGTGTCTCTAATTGGTTCTTTCACGAGTTGGTTAAAACACATACCTATGTCTCCGATGGAGGGATGCCCTGCAGTATTTCAGGTTACCTGCAGCTTAACGCCGGGATATCATCAGTACAAATTTATTGTTGATGGTGAGTGGCGGCATGATGAGCAGCAACCATTTGTCAGTGGGAGCTACGGATTAGTGAATGCTATTTACTTAATGAGGGAACCGGATGTTTTACCTTCCATCTTAAGTGCTGAAACACCTGGTAGATCCCACATGGAGGTTGATAATGATGTCTTTGGGCATGCAGGAGCTAATCCAAGGATGACAGAGCCTGATCTGGAGGTCTCTCGGCACCGTTTATCTGTATTCTTGTCTACACATACTGCATATGATTTGCTTCCTGAGTCAGGGAAGGTCATTGCCTTGGATATAAATCTACCAGTTAAGCAAGCATTCCATGTTCTGTATGAACAGGGCATATCTATGGCTCCTCTATGGGATTTTTGCAGGAGTCGGTTTGTTGGAGTGCTTAGTGCAATGGACTTTATTCTAATATTGAAAGAGATGGGGAATCATGGATCAAATTTGACAGAAGAACAACTTGAGACTCATACTATAGCAGCCTGGAAAGAGGGAAAATTACAGCAACGCAGAACAATTGATAGTAATGGGGGATCATATCCTTGGCGTTTTGTTCATGCTGGACCCCATGAATGTCTGAAAGATGTGGCTCTGAAGGTTTTGCAAAACAAGATATCAACAGTTCCTATCATCCATTCTTCTTCAGAGGACGGTTCATTCCCTCAATTGCTACATCTTGCTTCCCTATCAGGAATACTAAAATGTATATGCAGGCATTTTAAGCACTCCGCTAGTTCTTTGCCCATTCTTCAACTTCCGGTTGGTTCAATACCCTTGGGTACATGGGTGCCTAAAGTTGGGGAACCGAATGGCCAGCCACTTGCAATGCTTAGGCCAAATGCTTCTCTTGGTGCTGCTCTGTCAATGTTTGTTCAAGCTGAAGTTAGCTCAATACCGATTGTGGATGACAATGATTCATTGATTGACATATATTCAAGAAGTGATATTACTGCATTGGCTAAAGATAAAGCTTATGCTCGTATATCTCTCGATGAAATTAGTATTCATCAGGCATTGCTTTTGGGACAAGATGCAAATTCTCCTTATGGGCTTTACAATGGCCATAGATGTCATATGTGTTTGAGGTCTGATTCATTGCACAAAGTGATGGAGCGGTTGGCTAATCCTGGGGTTAGGAGACTTGTGATTGTGGAGGCTGGCAGCAAGCGCGTGGAAGGGATTATTTCCTTAAGGGACGTGTTCAAATTCTTGTTAGGCTAG 1452 0.436 MFASVGDTGYEGTGVSGPGLIPKRFVWPHGGRRVSLIGSFTSWLKHIPMSPMEGCPAVFQVTCSLTPGYHQYKFIVDGEWRHDEQQPFVSGSYGLVNAIYLMREPDVLPSILSAETPGRSHMEVDNDVFGHAGANPRMTEPDLEVSRHRLSVFLSTHTAYDLLPESGKVIALDINLPVKQAFHVLYEQGISMAPLWDFCRSRFVGVLSAMDFILILKEMGNHGSNLTEEQLETHTIAAWKEGKLQQRRTIDSNGGSYPWRFVHAGPHECLKDVALKVLQNKISTVPIIHSSSEDGSFPQLLHLASLSGILKCICRHFKHSASSLPILQLPVGSIPLGTWVPKVGEPNGQPLAMLRPNASLGAALSMFVQAEVSSIPIVDDNDSLIDIYSRSDITALAKDKAYARISLDEISIHQALLLGQDANSPYGLYNGHRCHMCLRSDSLHKVMERLANPGVRRLVIVEAGSKRVEGIISLRDVFKFLLG. 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05778 483 Pfam CBS domain 434 482 IPR000644 -
Seca1g05778 483 Pfam CBS domain 350 394 IPR000644 -
Seca1g05778 483 SUPERFAMILY CBS-domain pair 148 319 IPR046342 -
Seca1g05778 483 Pfam Glycogen recognition site of AMP-activated protein kinase 21 105 IPR032640 -
Seca1g05778 483 Gene3D - 140 323 IPR046342 -
Seca1g05778 483 SMART cbs_1 168 217 IPR000644 -
Seca1g05778 483 SMART cbs_1 350 398 IPR000644 -
Seca1g05778 483 SMART cbs_1 433 482 IPR000644 -
Seca1g05778 483 FunFam Sucrose nonfermenting 4-like protein 19 102 - -
Seca1g05778 483 SUPERFAMILY CBS-domain pair 349 482 IPR046342 -
Seca1g05778 483 Gene3D Immunoglobulins 20 101 IPR013783 -
Seca1g05778 483 ProSiteProfiles CBS domain profile. 346 404 IPR000644 -
Seca1g05778 483 ProSiteProfiles CBS domain profile. 162 224 IPR000644 -
Seca1g05778 483 Gene3D - 330 483 IPR046342 -
Seca1g05778 483 SUPERFAMILY E set domains 19 100 IPR014756 -
Seca1g05778 483 CDD E_set_AMPKbeta_like_N 24 99 - -
Seca1g05778 483 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 149 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05778 Seca-Chr1 161129263 161138183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05778 25 111 Protein tyrosine phosphatase (PTP) family AT3G01510 34.831 3.15e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05778 - - gmx:100814655 841.647