Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05775 ATGGTACAAACTCAAATTCACAAACCCCTCCTCCACCTGCTAAGAAGAAAAGAAGCCTACCAGGAAATCCAGGATCCAAGTGCTGAAGTGATAGCACTATCGCCAAACACACTTTTGGCGACAAATCGATTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGGGATCAAAACCTTCAATTGCACCGGCGAGGCCATAACCTGCCGTGGAAGCTTAAACAGAGAAGCAGCACACAAGTTCGAAAACGGGTTTATGTTTGTCCAGAACCTTCTTGTGTCCACCACAACCCAACAAGAGCACTGGGTGATCTCACTGGCATTAAAAAGCACTTTAGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCCGTCCAATCTGACTGGAAAGCCCATTCCAAAATTTGTGGTACAAAGGAATACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGATAGCTTCATCACCCACAGAGCTTTCTGTGATGCACTGGCAGAGGAGAACAACAAAGTGAATGCAGGAGCACAGTGCCAACCAATTATCCCAAACCCATTACCAACAATGAATAATAATAACCATTCCAATGAAAAGCAGCCATTATTACCACTCCCTCATGACCTCATGATGACATTAATGCCTACAGCAGCAGCAAAACCATTTAGCAACAATAATTCTCCCTCTCTTCAACTGAGTTCATCAAACAGAGGCTCAACTCATGATCAATATCACATGTCAGCAACAGCATTGCTTCAAAAAGCTGCACAAATGGGACCAATAGTGAGTAGTGAAAAAAGTTTTGTCACAACAATGGCACCACCATCATTCAGTACTAATGAGGTAATCATGAACCAGCAGTATGGTAGTCAACTACAGGACATTCCTAATTGTGATCAGTATAATTTCAATGGCAATAATATTGGGATGAGTGGTTTGGATATGTTCAATGCTATATTGGATCAAAGTAAGGCCTTATCGAAGATTATTGAGCAGAATAGAAGCAGTGTTTTGTGTCCAACAATTAATGTTAAAGGAAGTGATGAGGATGTGATGACTTTGGACTTGCTGGGGATAGGAGTAGGAGTAGGAGGACATGGCAATTTGTGTGGTGGAATCCAACAACAGTCAGAAACGGCTGCAAGAGATGATGAGATTTGGAGAAAGTACTGGTCAAACAAGAATAATATTGCAGGCTTTGAATCATTTTCAGCAACAAGTAGTTAG 1242 0.4163 MVQTQIHKPLLHLLRRKEAYQEIQDPSAEVIALSPNTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSTQVRKRVYVCPEPSCVHHNPTRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALAEENNKVNAGAQCQPIIPNPLPTMNNNNHSNEKQPLLPLPHDLMMTLMPTAAAKPFSNNNSPSLQLSSSNRGSTHDQYHMSATALLQKAAQMGPIVSSEKSFVTTMAPPSFSTNEVIMNQQYGSQLQDIPNCDQYNFNGNNIGMSGLDMFNAILDQSKALSKIIEQNRSSVLCPTINVKGSDEDVMTLDLLGIGVGVGGHGNLCGGIQQQSETAARDDEIWRKYWSNKNNIAGFESFSATSS. 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05775 413 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 66 IPR013087 -
Seca1g05775 413 FunFam protein indeterminate-domain 12-like 23 91 - -
Seca1g05775 413 Gene3D Classic Zinc Finger 22 90 - -
Seca1g05775 413 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 379 IPR031140 -
Seca1g05775 413 Pfam Zinc-finger double-stranded RNA-binding 44 66 IPR022755 -
Seca1g05775 413 MobiDBLite consensus disorder prediction 225 246 - -
Seca1g05775 413 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Seca1g05775 413 Gene3D Classic Zinc Finger 98 178 - -
Seca1g05775 413 SMART c2h2final6 85 115 IPR013087 -
Seca1g05775 413 SMART c2h2final6 44 66 IPR013087 -
Seca1g05775 413 SMART c2h2final6 120 140 IPR013087 -
Seca1g05775 413 FunFam protein indeterminate-domain 5, chloroplastic-like 98 177 - -
Seca1g05775 413 SUPERFAMILY beta-beta-alpha zinc fingers 43 140 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05775 Seca-Chr1 161076736 161080793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05775 15 177 IDZ Gene Family AT3G50700 83.436 9.18e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca1g05775 zf-C2H2_jaz 5.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05775 - - gmx:100785295 457.218