Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05745 ATGGTTTCTGAAAACTCACTCTCTTCTTCTAAACGGTCTCCAGCTACTCCTAACTTCTGCAACTCATTCACTACTAGGATTTTTGCTGATGTTGCTGGTGACATTACTATTGTCGTTGATGGAGAGTCATTTCTCCTGCACAAGTTTCCCTTGGTGACCCTAAGTGGGAAGATCCGGAAGATGGTTGCTGAAGCCAAGGGTTCCAATGTTTCAAACTTGGAGTTCCCCAACTTTCCAGGGGGACACCAGACATTTGAACTTGCAATGAAGTTCTGTTATGGGATGAATTTTGAGATTACAACATTTAATGTTGCCAAGCTACGTTGTGCAGCTGACTACCTGGAAATGACAGAAGAATACAGAGAGCAAAACCTCATCTCAAGAACAGATACTTATATGAATGAGATTGTCTTTCAAAATCTTCAGAAGTCAGTGGAAGTGCTATCCACCTGTGAGATGTTACCTACAAACATTGTGGAGGAGATTGAAATTTCAAACGGATGCATAGAATCCATTGCAATGAATGCCTGCAAGGAGCAACTAGTTTCTGGTTTATCTAGATTAGAATGTGATGGTGAATCTAGAGAACTAAAGGAGGGTTGTGTTGCATGGTGGGTTGAAGATCTCTCAGTATTGCGAATTGATTTCTTCCAGAGAGTTAAAGGAAGGTGTAAGTACTGTTAG 684 0.4108 MVSENSLSSSKRSPATPNFCNSFTTRIFADVAGDITIVVDGESFLLHKFPLVTLSGKIRKMVAEAKGSNVSNLEFPNFPGGHQTFELAMKFCYGMNFEITTFNVAKLRCAADYLEMTEEYREQNLISRTDTYMNEIVFQNLQKSVEVLSTCEMLPTNIVEEIEISNGCIESIAMNACKEQLVSGLSRLECDGESRELKEGCVAWWVEDLSVLRIDFFQRVKGRCKYC. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05745 227 ProSiteProfiles NPH3 domain profile. 203 227 IPR027356 -
Seca1g05745 227 Pfam BTB/POZ domain 34 118 IPR000210 GO:0005515
Seca1g05745 227 SMART BTB_4 33 125 IPR000210 GO:0005515
Seca1g05745 227 Gene3D Potassium Channel Kv1.1; Chain A 15 125 IPR011333 -
Seca1g05745 227 PANTHER OS12G0117600 PROTEIN 30 221 IPR043454 -
Seca1g05745 227 ProSiteProfiles BTB domain profile. 33 101 IPR000210 GO:0005515
Seca1g05745 227 SUPERFAMILY POZ domain 18 118 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05745 Seca-Chr1 160907991 160910392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05745 29 220 EF-hand Containing Proteins AT2G47860 41.284 4.71e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca1g05745 BTB 2.9e-07 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05745 - - gmx:100801644 401.749