Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05732 ATGGGGATCGATCTTAAGGCTGGGGGTAAGAGCAAAAAAACCAAACGAACAGCACCCAAGTCCAATGATATCTACCTCAATCTCCTCGTCAAGCTTTATCGCTTCCTTGTTCGAAGGACTGGAAGCAATTTCAATGCTGTCATACTTAAGCGATTGTTCATGAGCAAGGTTAACAGGCCTCCAATTTCTTTGTCAAGGTTAATTAAGTTCATGAAGGGCAAGGAAGGTAAAATTGCTGTTGTAGTAGGGACTGTAACTGATGATATCAGAGTATATGAAGTTCCAGCCCTAAAAGTTACCGCACTTAGGTTCACCGAAACAGCACGAGCAAGAATAGAAAAGGCCGGTGGGGAATGCTTGACATTTGATCAGCTTGCTCTGAGGGCTCCTTTGGGACAGAACACGGTCCTTCTTAGAGGCCCAAAGAATGCACGGGAAGCTGTGAAACACTTTGGTCCTGCTCCTGGTGTGCCACACAGCAATACCAAGCCTTATGTACGATCTAAGGGGAGGAAATTTGAGAGGGCTAGAGGAAGGAGGAACAGCAGAGGATTTAGGGTTTGA 564 0.4574 MGIDLKAGGKSKKTKRTAPKSNDIYLNLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNRPPISLSRLIKFMKGKEGKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFERARGRRNSRGFRV. 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05732 187 ProSitePatterns Ribosomal protein L18e signature. 50 67 IPR021132 GO:0003735|GO:0005840|GO:0006412
Seca1g05732 187 FunFam 60S ribosomal protein L18 1 187 - -
Seca1g05732 187 Gene3D - 1 187 - -
Seca1g05732 187 MobiDBLite consensus disorder prediction 150 187 - -
Seca1g05732 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
Seca1g05732 187 MobiDBLite consensus disorder prediction 170 187 - -
Seca1g05732 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Seca1g05732 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 187 IPR000039 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05732 Seca-Chr1 160810139 160819042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05732 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 77.957 6.41e-104 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05732 K02883 - csv:101209626 327.791