Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05728 ATGGCATTTGTTAATTTCCTTTTCATTCTCCTGCTTTTACCCTCCTCATTTGAGGCTTTCTCAGATGAAATTCCCTCTGATATCCAAACCCAAGACATGCATGCCTTGATTGCACAAGCCTGCATGGACATTGAGAACCAAAACACATGCCTCACAAACATTCAAAATGAGCTCACCAAAATTGGCCCACCAAGCCCCACTTCAGTCATAAGTGCTGCACTCAGGACCACACTCAATGAAGCCCAAAGTGCAATTAACAACATAACAAGATTCAGCACATTCTCTGTCAGTAACAGGGAACAAATAGCCATAGAAGATTGCAAGGAGCTTCTTGATTTCTCTGTGTCTGAGCTGGCATGGTCATTAGGTGAAATGAGGAGAATCAGAGCAGGGGACAAAAGCGTGCAATATGAAGGAAACCTTGAAGCTTGGTTAAGTGCAGCTCTTAGCAACCAAGACACGTGTCTTGAAGGATTTGAAGGCACTGATAGACGCCTTGAGAGCTACATTAGTGGAAGCTTAACACAAGTCACACAGCTTATAAGCAATGTTCTGTCTCTATACACTCAATTGCATAACTTACCCTTCAGGCCTCCAAGGAACACCACCACTACTACTCTTGTAACAAGTGATGAAGAACAACAAAGCTTGGATTTGGAGTTTCCTGAATGGATGACAGAGGGTGATCAAGAGCTCCTTAAATCCAAGCCACGTGGCATTCGTGCAGATGCTGTTGTGGCATTGGATGGAAGTGGTCACTACAGAACAATCACAGATGCTGTTAATGCAGCTCCAAGTCATAGCATCAGGAGATATATTATATACGTGAAGAAAGGACTTTATAAGGAAAATGTAGATATGAAGAAGAAAATGACCAACATCATGCTCGTAGGTGATGGTATTGGCCAAACCATTATCACAAGCAATCGCAATTTCATGCAAGGATGGACCACTTTTCGAACTGCCACTCTTGCTGTATCTGGGAAGGGTTTCATTGCAAGGGACATGACATTTCGCAACACTGCTGGACCAGTGAATCATCAAGCTGTGGCACTGCGTGTGGATTCAGATCAATCTGCTTTCTATAGGTGCAGTGTGGAAGGGCACCAAGATACTCTTTATGCACACTCACTGAGACAATTTTACCGTGAGTGCGAAATTTATGGTACCATAGACTTTATTTTTGGCAATGGGGCTGCTGTGTTGCAAAATTGCAAGATATACACTAGAGTTCCACTTCCCTTGCAGAAGGTTACTATCACAGCCCAAGGAAGAAAAAGCCCACATCAGAGCACTGGGTTTACAATCCAGGATAGTTATGTTTTGGCTACCCAACCCACATATTTGGGGAGGCCGTGGAAGCAATACTCTAGAACAGTTTACATTAACACATACATGAGTGCAATGGTTCAACCACGAGGGTGGCTTGAGTGGCTTGGAAACTTTGCCTTGGACACATTGTGGTACGGTGAGTACAGGAATTATGGGCCTGGTTCATCTCTTGCGGGTAGGGTCAAATGGCCCGGTTATCATATCATGAAAGATGCTGGTACCGCTAGTTTCTTCACGGTTCAACGATTCATTAATGGTGACTCATGGTTGCCGGGAACAGGCGTCAAGTTCACATCAGGCAGTAGGAGACTGGCCCTAATAGGGGTCTCAACGTTCTTACTGGTGGCTATGGTGGTTGCCGTTACCGTTAGTGTTGGGATCAGCAAGAATGGTTCCGGCGATGATTCAAAGGATAAAAACAAATCCCACGTGGCATCATCCATGAAAGCCGTGAAAACCATTTGTGCACCCACAGATTACAAGAAGGAATGCGAGGAAAGTCTCACAGCACAGGCTGGTAACACAACCGACCCAAGAGAACTCATCAAAATCGCCTTCAGCGTAACCATCAAAAGAATCAGTGAGGGCCTCGAGAAAACCCAGTTAATGCACGAGGTTGAGAGCGACCCTCGAACCAAAGAGGCACTCGACACGTGTAAGCAACTCATGCACCTCTCCATCGAGGAATTCAAACGGTCACTCGAGAGATTCGGTAAATTCGATCTCAACAACCTCGACAATATCCTAACGAGTTTAAAGGTATGGCTCAGCGGTGCAATCACGTACCAAGAAACGTGCCTTGACGCGTTTGAGAACACAACAACCGAAGCTGGTCACAAGATGAAGGACGTTTTGCAAACTGCCATGCACATGAGCAGTAACGGTCTTGCTATCATCACCGAGCTGTCAAAAACTCTCGATGAGATGCATCTCACAAAGCCTGGGAGACGCCTCTTGAAGGAAGCTGAGGATTTGGAAGTGCTTGGTCACGATGACTTTGAGCTTGAGCTTCCTGAATGGGTTGATGATCGCGTCGGTGTTCGTAGGCTCCTACGCATGACCGCAAGGAAACTCAGTGCTCACGTGACTGTTGCCAAGGATGGAAGTGGAAATTTCACCACCATCAACGAGGCATTGAAGCACGTGCCAAAGAATAACCTAAAGCCATTCGTTATCTACCTCAAGGAAGGCGTTTACGATGAGTACGTTGAAATCGCCAGAAGCATGACTCACGTGGTTTTCGTTGGTGATGGTGGTAAAAAGTCACGCATCACGGGCAACAAAAACTTCATAGATGGCGTCGGTACCTACAGAACCGCCACCGTTGGTACGTATACATCTCAATTTTCATGTTGGTTTAAAGCTAAATTAAATAATCACATACACCATGTGATCAACGGTTAA 2736 0.4543 MAFVNFLFILLLLPSSFEAFSDEIPSDIQTQDMHALIAQACMDIENQNTCLTNIQNELTKIGPPSPTSVISAALRTTLNEAQSAINNITRFSTFSVSNREQIAIEDCKELLDFSVSELAWSLGEMRRIRAGDKSVQYEGNLEAWLSAALSNQDTCLEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLHNLPFRPPRNTTTTTLVTSDEEQQSLDLEFPEWMTEGDQELLKSKPRGIRADAVVALDGSGHYRTITDAVNAAPSHSIRRYIIYVKKGLYKENVDMKKKMTNIMLVGDGIGQTIITSNRNFMQGWTTFRTATLAVSGKGFIARDMTFRNTAGPVNHQAVALRVDSDQSAFYRCSVEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSYVLATQPTYLGRPWKQYSRTVYINTYMSAMVQPRGWLEWLGNFALDTLWYGEYRNYGPGSSLAGRVKWPGYHIMKDAGTASFFTVQRFINGDSWLPGTGVKFTSGSRRLALIGVSTFLLVAMVVAVTVSVGISKNGSGDDSKDKNKSHVASSMKAVKTICAPTDYKKECEESLTAQAGNTTDPRELIKIAFSVTIKRISEGLEKTQLMHEVESDPRTKEALDTCKQLMHLSIEEFKRSLERFGKFDLNNLDNILTSLKVWLSGAITYQETCLDAFENTTTEAGHKMKDVLQTAMHMSSNGLAIITELSKTLDEMHLTKPGRRLLKEAEDLEVLGHDDFELELPEWVDDRVGVRRLLRMTARKLSAHVTVAKDGSGNFTTINEALKHVPKNNLKPFVIYLKEGVYDEYVEIARSMTHVVFVGDGGKKSRITGNKNFIDGVGTYRTATVGTYTSQFSCWFKAKLNNHIHHVING. 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05728 911 ProSitePatterns Pectinesterase signature 2. 387 396 IPR033131 -
Seca1g05728 911 SUPERFAMILY Pectin lyase-like 803 894 IPR011050 -
Seca1g05728 911 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 192 IPR035513 -
Seca1g05728 911 Pfam Plant invertase/pectin methylesterase inhibitor 594 742 IPR006501 GO:0004857
Seca1g05728 911 Pfam Plant invertase/pectin methylesterase inhibitor 36 187 IPR006501 GO:0004857
Seca1g05728 911 CDD PMEI-like_3 597 748 - -
Seca1g05728 911 PANTHER PECTINESTERASE 24 535 - -
Seca1g05728 911 CDD PMEI-like_4 49 191 - -
Seca1g05728 911 Gene3D - 802 897 IPR012334 -
Seca1g05728 911 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 192 IPR035513 -
Seca1g05728 911 NCBIfam pectinesterase inhibitor domain 6 192 IPR006501 GO:0004857
Seca1g05728 911 NCBIfam pectinesterase inhibitor domain 589 746 IPR006501 GO:0004857
Seca1g05728 911 FunFam Pectinesterase 591 747 - -
Seca1g05728 911 FunFam Pectinesterase 34 193 - -
Seca1g05728 911 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 593 747 IPR035513 -
Seca1g05728 911 SMART PMEI_2 590 742 IPR006501 GO:0004857
Seca1g05728 911 SMART PMEI_2 32 187 IPR006501 GO:0004857
Seca1g05728 911 SUPERFAMILY Pectin lyase-like 241 543 IPR011050 -
Seca1g05728 911 FunFam Pectinesterase 237 545 - -
Seca1g05728 911 Pfam Pectinesterase 805 893 IPR000070 GO:0030599|GO:0042545
Seca1g05728 911 Pfam Pectinesterase 243 531 IPR000070 GO:0030599|GO:0042545
Seca1g05728 911 Gene3D Invertase/pectin methylesterase inhibitor family protein 589 748 IPR035513 -
Seca1g05728 911 Gene3D - 238 545 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05728 Seca-Chr1 160766959 160771438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05728 551 887 Carbohydrate Esterase AT3G05620 25.714 6.93e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05728 K01051 - gmx:100810565 936.021