Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05723 ATGGGGCATTTATCCTCTATGTTCAATGGATTGGCAAGGTCCTTTTCAATAAAGAAAGGAAAAAGTTCTGGGAGATGTGGTGGGAGAGAAGCTGCTGAAGCAATGGCAAAGGAAGCTAAGAAAAATGACTTGATATTGTGTAGCTCTGGCAATGTTAATGTGGATGGTTCAAACAACTTTGCCTCCATTTTCTCCAAAAAAGGCCAGAAAGGAGTCAACCAGGATTGCTGCATAGTATGGGAGGAATTTGGATGCCAAGAAGACATGATCTTCTGTGGGATTTTTGATGGACACGGACCATGGGGTCACTTTGTGGCCAAAAGAGTAAGAGAGTCAATGCCTCCTTCTTTGCTATGTAACTGGCAAGAGACACTTGCTCAATCTTCTCTTGAGCCAGATATTGATACAGAGGAAGAGAAAAAGCAACAAAGGTTCAATATATGGAAGCATTCTTACTTGAAAACTTGTGCTGCCATTGATCATGAACTAGAGCGCTATCGCAAGATAGACTCATTTTACAGCGGAACCACTGCCCTGTCAATTGTTAGACAGGGTGAATTCATTTTCATAGCAAATGTTGGTGATTCTCGTGCTGTATTAGCTACAACATCAGATGATGGAAGTTTGGTACCGGTTCAATTAACAGTTGATTTCAAGCCAAATTTACCACAAGAGGCAGAGAGAATAATTCAGTGCCAGGGAAGAGTGTTCTGTTTACACGATGAGCCTGGGGTGCATAGGGTGTGGTTACCGGATGAAGAGTCTCCAGGATTAGCCATGTCAAGGGCTTTTGGTGATTATTGCATTAAAGACTATGGTCTTATTTCAGTGCCTGAAGTAACACACAGAAATATAAGCAATAAAGACCAGTTTGTTGTGTTAGCCACTGATGGGGTTTGGGATGTGATCTCCAATCAAGAAGCAGTAGATATTGTATCTTCAACACCAGACAAAGCAAAATCAGCAAAACGTCTTGTGGAGTGTGCAATGCATGCATGGAAACGAAAGAGAAGGGGCATTGCCATGGATGATATTTCAGCAATTTGTCTCTTCTTTCACTCTCCCCTTTCACCAGACCAAGTTAAGCTTAGCCAAGTTGCTAAATTGAAATAG 1113 0.4178 MGHLSSMFNGLARSFSIKKGKSSGRCGGREAAEAMAKEAKKNDLILCSSGNVNVDGSNNFASIFSKKGQKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKRVRESMPPSLLCNWQETLAQSSLEPDIDTEEEKKQQRFNIWKHSYLKTCAAIDHELERYRKIDSFYSGTTALSIVRQGEFIFIANVGDSRAVLATTSDDGSLVPVQLTVDFKPNLPQEAERIIQCQGRVFCLHDEPGVHRVWLPDEESPGLAMSRAFGDYCIKDYGLISVPEVTHRNISNKDQFVVLATDGVWDVISNQEAVDIVSSTPDKAKSAKRLVECAMHAWKRKRRGIAMDDISAICLFFHSPLSPDQVKLSQVAKLK. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05723 370 PANTHER PROTEIN PHOSPHATASE 43 350 IPR015655 GO:0004722|GO:0006470
Seca1g05723 370 SUPERFAMILY PP2C-like 59 353 IPR036457 -
Seca1g05723 370 ProSiteProfiles PPM-type phosphatase domain profile. 60 352 IPR001932 -
Seca1g05723 370 Pfam Protein phosphatase 2C 81 327 IPR001932 -
Seca1g05723 370 SMART PP2C_4 47 350 IPR001932 -
Seca1g05723 370 CDD PP2Cc 59 352 IPR001932 -
Seca1g05723 370 Gene3D - 51 354 IPR036457 -
Seca1g05723 370 FunFam Probable protein phosphatase 2C 34 51 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05723 Seca-Chr1 160711455 160715287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05723 1 353 PP2C-type Phosphatase Gene Family AT3G05640 75.000 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05723 - - gmx:100808955 656.366