Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05719 ATGAGTAGGCGTGAATTGTCAAGGATGAAGCCACCGCCCGTTCCATTGGCGACTCTGATCGGCCGTGAGCTTCGGAATGAAAAAGTTGAAAAACCTTTAGTGAAGTATGGGCAAGCTGGCTTGGCCAAAAAAGGAGAAGATTACTTTCTGATCAAGACAGATTGCCACAGGGTTCCTGGGGATTCATCAACAGCGTTTTCTGTTTTCGCGATCTTTGATGGGCATAATGGTATATCAGCTGCTATTTTTGCGAAGGAAAACTTGCTCAGTAATGTTTTGAGTGCAATACCACAAGATATCAGCAGGGATGCGTGGCTTCAGGCCCTTCCTCGTGCTCTAGTTGTTGGTTTTGTGAAAACTGACATAGAGTTTCAGCAAAAGGGGGAAACTTCTGGAACAACAGCTACATTTATCCTGGTTGATGGATGGACTGTCACTGTTGCATCTGTTGGGGATTCCCGCTGCATATTAGATACCCAAGGAGGTGTAGTTTCTCTCCTGACAGTCGATCACAGATTGGAAGAGAATGCAGAAGAGAGGGAGCGCGTTACTGCTAGTGGTGGCGAAGTAGGAAGACTCAATGTATTTGGAGGCAATGAGGTCGGGCCTCTTCGCTGCTGGCCTGGTGGATTGTGCCTATCTAGATCAATAGGTGACACAGACGTTGGAGAATTTATTGTGCCAATACCACATGTTAAGCAAGTGAAGCTTTCAAATGCTGGTGGAAGGCTTATTATAGCCTCTGATGGTATTTGGGATGCTTTATCTTCTGATATGGCTGCCAAGTCATGTAGGGGTCTGCCTGCAGAGCTTGCTGCAAAGCTAGTTGTTAAGGAAGCTCTAAGATCGAGGGGCCTGAAGGATGATACAACCTGCCTCGTTGTAGATATTATTCCATCTGACCTTCCTGTATTACCACCAACTCCAAGAAAGAAACATAATATACTAACTTCCTTTCTCTTTGGAAAGAAATCTGAGAACTCTACAAACAAAGCTACTTCTAAGCTTTCTGCAGTTGGTGTTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTACTGAAAGGCTGGGTAAAGATTTTCCGTTTAATAAGAATTCTGGGATTTTCCGCTGTGCGGTTTGCCAAGTGGATCAACCCCCTGGCGATGGCTTATCAGTGAACTCTGGGCCTTTTTTCTCTCCCGCTTCTAAGCCTTGGGAAGGCCCATTCCTCTGTACAAACTGTCGGAAGAAAAAAGATGCCATGGAAGGAAAAAGGCCCAGCAGACCCACCGTTATGGCATAG 1287 0.4569 MSRRELSRMKPPPVPLATLIGRELRNEKVEKPLVKYGQAGLAKKGEDYFLIKTDCHRVPGDSSTAFSVFAIFDGHNGISAAIFAKENLLSNVLSAIPQDISRDAWLQALPRALVVGFVKTDIEFQQKGETSGTTATFILVDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENAEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEFIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDLPVLPPTPRKKHNILTSFLFGKKSENSTNKATSKLSAVGVVEELFEEGSAMLTERLGKDFPFNKNSGIFRCAVCQVDQPPGDGLSVNSGPFFSPASKPWEGPFLCTNCRKKKDAMEGKRPSRPTVMA. 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05719 428 PANTHER PROTEIN PHOSPHATASE 50 296 IPR015655 GO:0004722|GO:0006470
Seca1g05719 428 SUPERFAMILY PP2C-like 38 297 IPR036457 -
Seca1g05719 428 ProSiteProfiles PPM-type phosphatase domain profile. 28 297 IPR001932 -
Seca1g05719 428 Gene3D - 35 301 IPR036457 -
Seca1g05719 428 SMART PP2C_SIG_2 50 297 IPR001932 -
Seca1g05719 428 FunFam probable protein phosphatase 2C 5 35 302 - -
Seca1g05719 428 SMART PP2C_4 23 295 IPR001932 -
Seca1g05719 428 CDD PP2Cc 43 297 IPR001932 -
Seca1g05719 428 Pfam Protein phosphatase 2C 62 280 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05719 Seca-Chr1 160662446 160665873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05719 1 426 PP2C-type Phosphatase Gene Family AT1G09160 77.700 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05719 - - gmx:100807886 803.127