Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05717 ATGGTAAGGGGAGGAAAGGTTAGCGGCAAACGCAATTTCAGGAAAAAGGTTCGGTCAAAAGAAGGCGGTTCTGATGATTCCGATGAGGATTATGTGGTTTCAGGTGATGGTGGGGATGTGTCTGATTGTCCAGAGGATTATTGCTCCTCTTTAGATGGATGTGCATCTGAGGAGAGTTTTGATGGTTTTATAGAAGAGGAAGATGAGGAGGAGGAGATTCAACGGGCGAGGAAATTCAATAGATCAAAGACCAAAAATGGCTTATATGGTCAGAGGAAAAATGCAAGTAAAACCTCGCGAAAGAGGGCAAGAAATACATATGCAAAACAACTAGAACAAGAACGAGATGGAGATGAAGGTGAGGATGAGGATGAGGATGAGGATGAGGATTTCAATTATGATGATGATGATGATGGAGAATTTACACCAGAGGAAGAAGATTACTCAGACGAGGAAGAAGAAACAAGGATCACAAAGAAGAAAAATAATGGCATGAAAATGGGAAAGAAGGTTTTGCAGAGAAGGGTTTCTGTGACTTCTAGAAGAGGGCGAAAAAGGAGGGGTTCTAGAGTTTCAAAGAAGCCCTTGAGAAAGAAAAGACGAAAGAGTGGAGGATTGAGGAGGAAAGTACAACGTGATGATGTAGATAATTTTATAGATAATGGCCCACTCATCCAGATAAGTAGGAGGAAAAAACCGGGCCGGAAAAGAAGAAGGCTTCTCCTTGAAGATTCAAATTCAGATTCAGATTGTATGTCCGGATCATCTGATTATGAATTTACTATCTCTGAAGAAGAAAGAGAACAGGTGAGAGAAGCCAAAGAATTGTGTGAAAGTTTAAGAAGGAACTTGAGGGGTGCTTCTGTTCTAATGAAAAATGAGGAGGTTGGAGTACATGAAAATCCACATCAACAACGGAAGCCTCCAGGACGGAAGGGTAAGGAAAAGATAGAGGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTACAGGATTTAAAAAGTGAGGTGGGAAAGCAGGTTTGTGGAATTTGTCTGACCGAGGAAAATAAAAGAAAAGTAAGAGGAGTATTAAATTGTTGCACTCACTATTTTTGCTTTGCTTGCATTATGGAGTGGTCAAAGGTGGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGTAAGCCTGCACGATCAACAGCTGGGGCTGATTTGAGAGAAGTGGTGATACAAGTGCCTGAACGTGATCAGGTTTATCAGCCCTCTGAAGAGGAACTAAGGAGCTATATTGATCCGTATGAGTCTGTTATTTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGTTACTCTGTGATATCTGTGATTCCCCTGCACATACTTATTGTGTTGGTTTGGGGCGGGAAGTACCTGAAGGTAATTGGTATTGTGATGGTTGTAGACCAGTTGCTTTGGGATCTTCAAATTCTCAAGTTCAAGAACGTGTGGCTGATTCAAGAGTGACAACCCAAAGCATGCCTGTTAGACCATCACCTGTTCATGTACGAGAAAGTATAAACCTCAATTTGATGTCTTCACCTCGTTTGTCTTTCAGTCAAGGGTCCGGGCATCTTTCCTCTTCTAGATTTTATGGCAGAAGTGCTGAAGGAGCTTCTCCAGTATCTGGAGGAGGGGCACCAACTTTATCAGAGAGACGATGGATACAACGTCAAATTCATCAGCTTCTCCAAGTAGATAGAATGACTTCTACAATTGGCAGAACCTCAGCTACCAGTACAATGGGTAACTTGCATAACTCTCAAATAGATCTAAGTAGGGAACCAGCCACTCAACATACAGGGAGACAGGATGCGGGAACATCATATCATACATTCTTGGAGGAGAGATTAGGCAACAATATCTCTCCATTTATGCAGAATGGAGATCCCCTCCCCATAAGAATAAGCAATTCAAGGAGGCCAGTGGTTCAGGATTCAACCATGTTTCCCAACAGGCCTATTAATGAGATGTTATGGCCTGGACTTTTGGGGACATCCACCTTATCAGATTATGATCCAATCCATCAGTTCAGCAGCAGATCAAATATTGTCATTGATAGTAATTTGTCCCCTGCTATCAAAGAAGAAAGTAACTTCCACATTGTAAAGGAGCAGCTGCAGTCAATGGTTAGAAGCCATCTGAAGAGCTTGTCTCGAGATATTGAATTAGGCTATAATACTTTCAAGGACATTGCAAGGAGATCTACACATACCATACTCGCAGCTTGTGGTCTCGAGCACAATGAGAATGAGGTTTTGACTGTGCCCTCTCCATCCGCCTGTCCCCACATGGAACTAATGGCTGGTGGACAAACGAGTATGATGAAGGGTTACTGCTGCTCTTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAAAGGATTTTGGACACAAGAATGTCTTCACAGTGGTTACGATTAGGACTTTAG 2457 0.4237 MVRGGKVSGKRNFRKKVRSKEGGSDDSDEDYVVSGDGGDVSDCPEDYCSSLDGCASEESFDGFIEEEDEEEEIQRARKFNRSKTKNGLYGQRKNASKTSRKRARNTYAKQLEQERDGDEGEDEDEDEDEDFNYDDDDDGEFTPEEEDYSDEEEETRITKKKNNGMKMGKKVLQRRVSVTSRRGRKRRGSRVSKKPLRKKRRKSGGLRRKVQRDDVDNFIDNGPLIQISRRKKPGRKRRRLLLEDSNSDSDCMSGSSDYEFTISEEEREQVREAKELCESLRRNLRGASVLMKNEEVGVHENPHQQRKPPGRKGKEKIEEPQGRKGKEKVQDLKSEVGKQVCGICLTEENKRKVRGVLNCCTHYFCFACIMEWSKVESRCPLCKQRFKTISKPARSTAGADLREVVIQVPERDQVYQPSEEELRSYIDPYESVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSNSQVQERVADSRVTTQSMPVRPSPVHVRESINLNLMSSPRLSFSQGSGHLSSSRFYGRSAEGASPVSGGGAPTLSERRWIQRQIHQLLQVDRMTSTIGRTSATSTMGNLHNSQIDLSREPATQHTGRQDAGTSYHTFLEERLGNNISPFMQNGDPLPIRISNSRRPVVQDSTMFPNRPINEMLWPGLLGTSTLSDYDPIHQFSSRSNIVIDSNLSPAIKEESNFHIVKEQLQSMVRSHLKSLSRDIELGYNTFKDIARRSTHTILAACGLEHNENEVLTVPSPSACPHMELMAGGQTSMMKGYCCSCFDSFVGDVVKRILDTRMSSQWLRLGL. 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05717 818 ProSiteProfiles Zinc finger RING-type profile. 341 383 IPR001841 -
Seca1g05717 818 SUPERFAMILY FYVE/PHD zinc finger 405 479 IPR011011 -
Seca1g05717 818 CDD RING-HC_Topors 339 386 - -
Seca1g05717 818 SUPERFAMILY RING/U-box 335 389 - -
Seca1g05717 818 MobiDBLite consensus disorder prediction 59 256 - -
Seca1g05717 818 Coils Coil 263 283 - -
Seca1g05717 818 PANTHER F18C1.6 PROTEIN 1 808 - -
Seca1g05717 818 SMART ring_2 341 382 IPR001841 -
Seca1g05717 818 SMART PHD_3 433 478 IPR001965 -
Seca1g05717 818 MobiDBLite consensus disorder prediction 539 558 - -
Seca1g05717 818 MobiDBLite consensus disorder prediction 293 329 - -
Seca1g05717 818 MobiDBLite consensus disorder prediction 1 46 - -
Seca1g05717 818 MobiDBLite consensus disorder prediction 296 329 - -
Seca1g05717 818 ProSitePatterns Zinc finger RING-type signature. 360 369 IPR017907 -
Seca1g05717 818 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 420 504 IPR013083 -
Seca1g05717 818 Pfam Ring finger domain 340 383 IPR001841 -
Seca1g05717 818 Pfam PHD-finger 433 479 IPR019787 -
Seca1g05717 818 MobiDBLite consensus disorder prediction 116 152 - -
Seca1g05717 818 Coils Coil 818 818 - -
Seca1g05717 818 ProSiteProfiles Zinc finger PHD-type profile. 431 480 IPR019787 -
Seca1g05717 818 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 407 IPR013083 -
Seca1g05717 818 MobiDBLite consensus disorder prediction 175 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05717 Seca-Chr1 160644102 160647921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05717 351 477 C2H2 Transcription Factor Family AT3G01460 27.972 9.46e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca1g05717 PHD 4.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05717 - - psat:127132436 955.666