Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05714 ATGGTAATCATGGATCTCAAGGAGAAGAAATGGTCATCGAGTGAGATCAAGAAGTGTTGTACTGATTGCAAAACCACCAAAACCCCACTCTGGAGAGGAGGACCAGCTGGCCCTAAGACTTTGTGCAACGCTTGCGGAATTAGGTACAGGAAGAGAAGGGCTTGTACGGTGGGAATGAACAAAGGACAAGAGAGGAAGAGAGAGAGAGCACAAACACAGAGAATCTCTGGCTCTGGTAAAACGGTTGTTGGTGGTGGTGGAAGCGATTTGAGGGAGTCTTTGAAGATGAAGTTAATGGCGTTGGGTGAGGAGGTTTTGTTGCAACGGTCACCTTCGCTTTTGAAGAAACAGAGGAGGAATAAGTTAGGGGAGGAGGAACAAGCAGCTATGTGTTTGATGGCACTGTCTTGTGGCTTTGTTTTTGCTTGA 429 0.4685 MVIMDLKEKKWSSSEIKKCCTDCKTTKTPLWRGGPAGPKTLCNACGIRYRKRRACTVGMNKGQERKRERAQTQRISGSGKTVVGGGGSDLRESLKMKLMALGEEVLLQRSPSLLKKQRRNKLGEEEQAAMCLMALSCGFVFA. 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05714 142 ProSitePatterns GATA-type zinc finger domain. 20 45 IPR000679 GO:0006355|GO:0043565
Seca1g05714 142 Pfam GATA zinc finger 20 53 IPR000679 GO:0006355|GO:0043565
Seca1g05714 142 PANTHER OS01G0976800 PROTEIN 9 141 - -
Seca1g05714 142 SMART GATA_3 14 64 IPR000679 GO:0006355|GO:0043565
Seca1g05714 142 MobiDBLite consensus disorder prediction 60 88 - -
Seca1g05714 142 CDD ZnF_GATA 20 53 IPR000679 GO:0006355|GO:0043565
Seca1g05714 142 ProSiteProfiles GATA-type zinc finger domain profile. 20 50 IPR000679 GO:0006355|GO:0043565
Seca1g05714 142 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 13 53 - -
Seca1g05714 142 Gene3D - 15 77 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05714 Seca-Chr1 160625653 160627227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05714 14 142 C2C2-Gata Transcription Factor Family AT3G06740 50.000 4.10e-33 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca1g05714 GATA 3.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05714 - - pcin:129306793 168.318