Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05712 ATGGATCGGGAAGGAGGAGGATCCAACGGCGGATCTTGCTACTACTCTGTTCTCGGGATTCGCAGGGACGCCTCCTCCTCTGATATTCGCACTGCTTACCGCAAGCTTGCTATGAAGAAGTGGCACCCGGACAAATGGGCTCGGAACCCTGCAACTGCTGGAGAAGCAAAGCGGCGCTTTCAGCAAATCCAGGAAGCTTACTCAGTTCTCTCTGATGAGTCTAAGAGGTCAATGTACGATGCTGGGCTTTATGATCCCTTAGAGGAAGATGACCAAGTCCGTATCGTTTCCTTTCAATTTGATTTGCAGTTGCTTTTTGCCGTAAACAAGCCGAGGTAA 339 0.5015 MDREGGGSNGGSCYYSVLGIRRDASSSDIRTAYRKLAMKKWHPDKWARNPATAGEAKRRFQQIQEAYSVLSDESKRSMYDAGLYDPLEEDDQVRIVSFQFDLQLLFAVNKPR. 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05712 112 ProSitePatterns Nt-dnaJ domain signature. 60 79 IPR018253 -
Seca1g05712 112 SUPERFAMILY Chaperone J-domain 13 88 IPR036869 -
Seca1g05712 112 SMART dnaj_3 12 75 IPR001623 -
Seca1g05712 112 PRINTS DnaJ domain signature 34 49 IPR001623 -
Seca1g05712 112 PRINTS DnaJ domain signature 15 33 IPR001623 -
Seca1g05712 112 PRINTS DnaJ domain signature 55 75 IPR001623 -
Seca1g05712 112 PANTHER PUTATIVE, EXPRESSED-RELATED 8 92 - -
Seca1g05712 112 ProSiteProfiles dnaJ domain profile. 13 83 IPR001623 -
Seca1g05712 112 CDD DnaJ 13 72 IPR001623 -
Seca1g05712 112 Gene3D DnaJ domain 2 100 IPR036869 -
Seca1g05712 112 Pfam DnaJ domain 14 80 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05712 Seca-Chr1 160611167 160612390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05712 13 81 C2H2 Transcription Factor Family AT1G74250 42.857 3.52e-13 62.4