LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g05711	ATGGCATCGAAGAGGACATCTGAGGAGAAAGATCAGGGTAATGATGAAAGGGATCTTCAAGTTCCTGGTGGTAAGCGGAGACATGGCTACTCACAACAAGAAGACGCTCGTGCTGCTGCTGCCACCAGTGAATTCGCCTTGTGCTTGGAACCCCTGCTTCGAAGAGTGATACAAGAGATGATTCCACCTATGCTCCAGCGTCACCTATGTCCGCGTTGTGCATTAACCGTCAACCAGGAGGCTAGCACATCTGGAAGGAGTTCTTCGCAATTGCAGCTGTGCTTCACGAATAGATTGCCTCACACAATTTTCACACAGTCCAATATCACAGCTGAAGGAGGTGTTGCACTTCAAATTGAGCTGCGTGATCAGCAAAGCAAAATCAGGGACGAAGGTTCCTCTGTGAAGGTTCAGATCTGTGTCCTTAATGGTGACTTTGAAAAGGAGGTTTGGACTGCAGAGGAATTTAATAACCAAATTGTAACTCAAAGACCGGAAAAAGGACCATTGCTGAATGGAGATACGGTTATTACACTAAAAAATGGAGTTGCTCACATCAATAGCAAGATTGTGTTCACTGATAACTCTAGCTGGACAAGAACCAAAACGTTCCGCTTAGGAGTTAAAATAGTGCAATATAATTCCAGTGGAGCAAACATTAGGGAAGGAAGAAGTGAACCTTTTAAGGTCTTGGATTACAGAGGACACGCGTGGAAGAAACACGACCGTCCATCATTGAAAGATGAGGTATGGCGTCTGAAGAAGATAGCAAAAGGCGGCAAACTTCACAGGCAGTTGTCCTTTCATAAAATAAAAACTGTTAAGGATCTTCTGCAGTTGTACATAACTAATCAATCTTCATTAAAACAGAAAATAGGCAAAGTTGCTGGGAAGTCATGGGATACAATTATTGCACATGCTAAAGGTTGTGATATAGACGATGATAAGCGCTACATCTATTTCGCAGCAGAATCATTAGTATCTCTTGTGTTTAATTGCATCTATGAGGTTGTGGAGGTGATTTTTAATGGGCAAAATTCTCGTCCTATTCAATCTCTGAATTCGGAAGAGAAGCGTTTGGTGGAAAGAGTTAAGCAGCAAGCTTACAACAATTTGAAGGATCTGAAGCCAATTGAGACAACACTGGCACTGCCAGGTGTGCAAACTGCACAATATGGTGGTCCAGATCAAGGTCTGCAACAGTTTGAATTTCCAATTGCTCAGCAAGGCCAACCAGAAACGTGGCCAACCACTTCAACTTCGGTAGGTTCTGATATACTGTCAGTGTTTTTGGGACAACTCACCCCAGGAGCATATATTGATGATGGAAACAGATTGCCCGCTAGTGTATCACAGACTGGTCCATTTGCAAGTTGCTTTCCTCCTAAAAACCAATGGGAGCAAGTGGATCCTTTCTACTTTCCTTATGGTGATGGAGCAGAATGTAGCAATCATTATTCCTTCCCCAACTCTGCTGGGTATATATCAAGCAAAGGGAAAGGCAAGACAGTTTGGAGTAAGATTCGAGCTGCTCTCAAATGGGTCAAACTCCATGTAGCTAAAAGAAACGCAAAACTTTTTCACCATCCGTATTGA	1596	0.4311	MASKRTSEEKDQGNDERDLQVPGGKRRHGYSQQEDARAAAATSEFALCLEPLLRRVIQEMIPPMLQRHLCPRCALTVNQEASTSGRSSSQLQLCFTNRLPHTIFTQSNITAEGGVALQIELRDQQSKIRDEGSSVKVQICVLNGDFEKEVWTAEEFNNQIVTQRPEKGPLLNGDTVITLKNGVAHINSKIVFTDNSSWTRTKTFRLGVKIVQYNSSGANIREGRSEPFKVLDYRGHAWKKHDRPSLKDEVWRLKKIAKGGKLHRQLSFHKIKTVKDLLQLYITNQSSLKQKIGKVAGKSWDTIIAHAKGCDIDDDKRYIYFAAESLVSLVFNCIYEVVEVIFNGQNSRPIQSLNSEEKRLVERVKQQAYNNLKDLKPIETTLALPGVQTAQYGGPDQGLQQFEFPIAQQGQPETWPTTSTSVGSDILSVFLGQLTPGAYIDDGNRLPASVSQTGPFASCFPPKNQWEQVDPFYFPYGDGAECSNHYSFPNSAGYISSKGKGKTVWSKIRAALKWVKLHVAKRNAKLFHHPY.	532

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g05711	531	Pfam	Calmodulin binding protein central domain	245	310	IPR046830	-
	Seca1g05711	531	PANTHER	OS02G0177800 PROTEIN	33	391	IPR012416	GO:0005516
	Seca1g05711	531	MobiDBLite	consensus disorder prediction	1	36	-	-
	Seca1g05711	531	Pfam	Calmodulin binding protein-like N-terminal domain	91	232	IPR046831	-
	Seca1g05711	531	MobiDBLite	consensus disorder prediction	1	33	-	-
	Seca1g05711	531	Pfam	Calmodulin binding protein C-terminal domain	316	377	IPR046829	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g05711	Seca-Chr1	160581941	160586598	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g05711	41	378	Calmodulin-binding Proteins	AT5G26920	42.105	1.55e-78	251

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g05711	-		-	lja:Lj1g3v4083120.1	584.334