LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g05710	ATGGTATCAAATAGGCAATCTCGTCTGGTGCATAAAGGCAGTGGTAAAATTCCAATTCAGGAGTCGAAATGGAGCCATGGTGATACAAAACAAGCATCAATTAGTGGCCTTAGAAATGTAATAAACGCAATACGGACGAAAAACCACGGTTCCTACTTGGAAAATTTCATTCGAACAGTGGTACGAGAGGAGGTGGAACGCAAAGTCCAGGATTACCTATTTTCAAGAGCAAGGGTTAATCAGGCTGGCACATCTGGAGCCAGGCCCTTACAGTTGTGTTTTATTAATAAGTTGCCTGATACACTTTATACTCTGTCTAATATAATAGCAGAGGATGAATCACCCCTTCAAATTGCTCTATTTGATGTTAAATCTCAGAAAGTAGTAACTGATGGTCCCTTCTCCTCAATTAAGGTAGAGATTTGTGCCCTCAAGGGTGAGTTTGGATCTCATGGCAATGAGGATTGGACTGAAGCTGAATTCAATGCCAATATCTTAAAGGAAAGAGATGGTAAAGAGCCACTGTTGAATGGAGAGAGGCTTATTACTCTTAAAAACGGAGTTGGTTGCATCACTAAAATTACCTTCACTGATAACTCAAGATGGCAAAGAAGCAGAAAGTTCAGGTTAGGTGTCAAAGCTGTGCAACCAACTCTTAGTGAAGAAAACATTAAGGAAGGTAGAAGTGAAGCTTTTATGGTCAAAGATAACAGAGGAGAGTCATACAAGAAGCACTACCCTCCATCCTTAAAAGATGATATATGGCGTTTGAAGAAAATTGCTAAAGAAGGAAAAATCCACAAGCGGCTCTCCCTCCATGGTATTCACACTGTTGAGCATCTCTTGCAGTTATACACGACCAATGAATCTTTATTATATGAGAAGTTTGGCAACATTCCAAAGAAGTCATTGTTAGCAATTGTTGAACATGCCAAGACCTGTGTGATAGATGATTACAAGCTTTACAGCTATCACACAATAGAGCAACCAATAGGTCTGCTATTCAATTCCATCTACAAACTTGTGGGAGTGACATTTGATTGGAAAAATTATGGTTCACCTGATACTCTCACACCCAGCAAGAAGTATTTGGTAGAAAAAGTGAAGCAGGATGCTTACAAAAACGTGGATAATTTGAAATTAATTGATGAAACTTCATTGAACAGCTTAAAACTTGAGGCCTGTATAAAAGCATGGGCTGGAGGGCCGTCATATGCCCCAGTTCAAGGTCTGCAAAATATTGATATCTCAACAACACAAGGCATATGTAATGGTATAATTTTTGGCTATTTGATTTTTTTTCTCTCTTATACTGCATCACTCATCAAGACTTTGAACTTACAAGGGATCCATCACTAA	1359	0.3893	MVSNRQSRLVHKGSGKIPIQESKWSHGDTKQASISGLRNVINAIRTKNHGSYLENFIRTVVREEVERKVQDYLFSRARVNQAGTSGARPLQLCFINKLPDTLYTLSNIIAEDESPLQIALFDVKSQKVVTDGPFSSIKVEICALKGEFGSHGNEDWTEAEFNANILKERDGKEPLLNGERLITLKNGVGCITKITFTDNSRWQRSRKFRLGVKAVQPTLSEENIKEGRSEAFMVKDNRGESYKKHYPPSLKDDIWRLKKIAKEGKIHKRLSLHGIHTVEHLLQLYTTNESLLYEKFGNIPKKSLLAIVEHAKTCVIDDYKLYSYHTIEQPIGLLFNSIYKLVGVTFDWKNYGSPDTLTPSKKYLVEKVKQDAYKNVDNLKLIDETSLNSLKLEACIKAWAGGPSYAPVQGLQNIDISTTQGICNGIIFGYLIFFLSYTASLIKTLNLQGIHH.	453

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g05710	452	Pfam	Calmodulin binding protein C-terminal domain	320	380	IPR046829	-
	Seca1g05710	452	MobiDBLite	consensus disorder prediction	1	26	-	-
	Seca1g05710	452	Pfam	Calmodulin binding protein central domain	249	314	IPR046830	-
	Seca1g05710	452	PANTHER	OS02G0177800 PROTEIN	46	396	IPR012416	GO:0005516
	Seca1g05710	452	Pfam	Calmodulin binding protein-like N-terminal domain	90	237	IPR046831	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g05710	Seca-Chr1	160576705	160581127	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g05710	53	387	Calmodulin-binding Proteins	AT5G26920	42.442	8.71e-84	262

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g05710	-		-	lja:Lj1g3v4777410.1	615.15