Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05708 ATGGAGATGGAGAAAAGGCGTTCCAAGGGAAGCTTCCTCAGCTTGTTTGATTGGAATGCCAAATCTCGAAAAAAGCTGCTTTGGAACAATGCTACCTTACCTGAGGTTTCAAAGCAAGGAAAGGAAAATGTGGAGACCTTGTCAGAGTCACAGCTCAGTAGGATGAAGGTGGATGAAAATGGAGCAAGTCCAAATAATATTGCAAGTTGTGATTTTAACTGTTCCCTATCAATTTATAGTGATGAAGGATGTGGGAGTAAAGCCCCTGGGTTAGTAGCTAGGCTAATGGGTTTGGATTCGATGCCAGCTTCGGCAGACACTGAGCTGGCCTGCACTTCATTGTATAGCTCCAACTCTCTTGGAGCTTCTCATTGTAATGAGGGTCCTCTTCATTCAATGGATGACTTTCACCGTGTGGACTACGTAAACACACCACTTAAGCTGCAGAAGTTTTCTCGGGATGCCATGGAATCAAGGGCACAGAAAATGGAAAACCGGCCGATAAAGAGATTTCAAACTGAAATGTTGCCTCCAAAGTCAGCTAAACCCATTCCAGTTACTCACAATAGAATGTTGTCTCCTATCAAGAGTCCTGGTTTTCTGCCACCAAAGAATGCGGCTCACTTAATGGAGGCAGCTGCTAAGATAAGTGAGTCAAACCCTCGGCCATATACGAGGGATAGAATGCCATCAGTTAGGCCTTCATCTGTTCCCTTGAGAATTCTTGATTTAAAAGAGAGATTGGAAGCTGCACATTATGCATCCATGCCTAAAAAGCTTGTGGATCCAAGCAATACCAACTCTGCAAATGGAAATCTTAATGAGAGGAGTAGCAGTTTGTATAAATGCACTTCGGCGTTCAAAGGTTCAAGAGATTCAGACAAAAATAGATCTTCCCATTTAGCAAGTAAAGGAAAATCAGCTTCACTTGCAGTCCAAGCCAAAACCAATGTTCAAAACAGAGATACATTGGTTTCAAATGGTGATAGGAAATATATGAAGCAGAAAGAACAGAATGAGATAAAGTCAAACCAGCTCCCAAGGAACCAGAAACCAAGGTCAAACCGATCCATGCAGCAGAGAACTTGCACAAGCCGGAATGGTGGTGTGCTTAGGCAGAATACTCAAAAGCAAAATAGCATGACCAGCAAAGGCAAATCAACTTTGAAAGTAGATTCCAATAAGCCAATGACGCAAGCTTTGTCTTCAGAAAGTTCTACTGGAATTAGGAAGACAAGAAACAAGGTTGCTATAAATGCCAATATTCAGCCTAAAAGGTCAAGCTCTAGGGCAACTGATAACCAAAAGGAGTTTCTGCCATCCAAAACAGAGAGTGTTTCCCAAAAGAAAAAGTATGTAAGAAGAGATGTCCATGAGGCAAGAGGGCCTGATAATGCAGTGAATAATTTTCAAAGTAAGTCCATAAAATGCAATTTTACAACTGATGGAAGTATTGATCAGGATGCATTTAACATGAAAGAAAGCAAGGATGTTATTTCATTTACATTTACATCTCCCTTGAGGAGAAGCATGCCTGAGTCACCCATCTCTACTGAGCAAGCTATGGGAACCAGAAACATAATTGGAGTCAACTCTCTCGGGCATAGTGATAATCTTTATCCCATAAATTTATCATCATCTCCGCCAGGGTTAAATATGATAGATGGTGATGCTTTAAATGTCCTGTTGGAGAAAAAGCTGCAAGAATTGGCATCTAGACTCAACTTGCCTCAAGGTATCCTGGCTACAGAGGGATCTTCTACTGGTTTGAGATCTAGTTTGCAAGACAAAGTTCCCAGCATGGTTAGCACCACATCTAAGGAACAAGACAAAAACTTTCACCCTGACCTGTTTGGTGACAAAGTGGATGGCATGCATAACTATCGTTGTTGTTCTAGTGAAGATCCGGTGTTTAACATGAATCGGCAACTTCGGACATCAGAAGTAAGGGAAGATCCTAGCTGTAGCAGTAACAGTGAAAGAGGAAATGATCTAGGATGTCAGCATTCCAGTGCAGTTACAGTTTTTGAAACTCCGTCTGTTAGTGAAAGTTACTTGGATAGTGAAGACAGTAGTACATATGGCAGCACAGTTTATTCTTCTATGCAAGATGAAGAAGTATCTAATTTTTCCCAGATAAACGAATCTGTATCACTTGAAAATGGGGTGAAATGGTTGGAGCAAAGCCCTTCCACATCAGTGGGTGGAAATATGATTGTCAAACAAATAAGTGGAATATCAAGTTTGGTAGATTTTAAAATATCATGTACCACGGAACTTGAATATGTACAGGATATACTTGGCAATGCAGAGTTTATGGCAGAAGAATTTGTCATGGGCCAAACTGATACGGTCATGATGCCAAATCTCTTTGATCTTTTGGAGAATCAGGGTAATGGAACAGAAAACTATGAGGAAGAGTGCTCTAAGCTGGAAAGGAAGGTTTTATTTGACTGTGTGAGTGAGTGCCTAGAGTTGAGATGTAAGCAAGCTTTTGTTGGAAGTTGCAAAGCATGGCCTAGATGGGTAACATCAGTTCAGAGGAAGAGCTGTTTGGCAGAAGAATTGTACAAGGAGATTCTGGGTTTTAGAAGCATGGAAGAGGTAATGATGGATGAGCTTGTCAGCAAGGACATGAGCACTGGATGCGGGAAATGGCTTGACTTTGATGTTGAAGCATTTGAAGAGGGTTTAGAGGTTGAGCGGCACATACTAGCTTATCTGATTAATGAATTGGTTTCTGATTTATTACTTGTCTAA 2760 0.4112 MEMEKRRSKGSFLSLFDWNAKSRKKLLWNNATLPEVSKQGKENVETLSESQLSRMKVDENGASPNNIASCDFNCSLSIYSDEGCGSKAPGLVARLMGLDSMPASADTELACTSLYSSNSLGASHCNEGPLHSMDDFHRVDYVNTPLKLQKFSRDAMESRAQKMENRPIKRFQTEMLPPKSAKPIPVTHNRMLSPIKSPGFLPPKNAAHLMEAAAKISESNPRPYTRDRMPSVRPSSVPLRILDLKERLEAAHYASMPKKLVDPSNTNSANGNLNERSSSLYKCTSAFKGSRDSDKNRSSHLASKGKSASLAVQAKTNVQNRDTLVSNGDRKYMKQKEQNEIKSNQLPRNQKPRSNRSMQQRTCTSRNGGVLRQNTQKQNSMTSKGKSTLKVDSNKPMTQALSSESSTGIRKTRNKVAINANIQPKRSSSRATDNQKEFLPSKTESVSQKKKYVRRDVHEARGPDNAVNNFQSKSIKCNFTTDGSIDQDAFNMKESKDVISFTFTSPLRRSMPESPISTEQAMGTRNIIGVNSLGHSDNLYPINLSSSPPGLNMIDGDALNVLLEKKLQELASRLNLPQGILATEGSSTGLRSSLQDKVPSMVSTTSKEQDKNFHPDLFGDKVDGMHNYRCCSSEDPVFNMNRQLRTSEVREDPSCSSNSERGNDLGCQHSSAVTVFETPSVSESYLDSEDSSTYGSTVYSSMQDEEVSNFSQINESVSLENGVKWLEQSPSTSVGGNMIVKQISGISSLVDFKISCTTELEYVQDILGNAEFMAEEFVMGQTDTVMMPNLFDLLENQGNGTENYEEECSKLERKVLFDCVSECLELRCKQAFVGSCKAWPRWVTSVQRKSCLAEELYKEILGFRSMEEVMMDELVSKDMSTGCGKWLDFDVEAFEEGLEVERHILAYLINELVSDLLLV. 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05708 919 MobiDBLite consensus disorder prediction 287 455 - -
Seca1g05708 919 Pfam Domain of unknown function (DUF4378) 759 911 IPR025486 -
Seca1g05708 919 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 2 915 - -
Seca1g05708 919 MobiDBLite consensus disorder prediction 302 326 - -
Seca1g05708 919 Pfam DUF761-associated sequence motif 80 104 IPR032795 -
Seca1g05708 919 MobiDBLite consensus disorder prediction 339 442 - -
Seca1g05708 919 Coils Coil 794 814 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05708 Seca-Chr1 160565797 160570421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05708 3 917 TRM (TON1 Recruiting Motif) Superfamily AT5G26910 31.974 1.80e-104 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05708 - - gmx:102663635 1304.66