Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05704 ATGTCTAACAACAGCAATAATACCGTTGGGGTTGACAACACGTTCAGAAGAAAATTTGATCGAGAAGAGTATCTCGAACGAGCTCGGGAGCGCGAGAGGCAGGAGGAGGAGAATCGATCAAAACCTAAAGCTAAAGGTCCTCCCGTGCAGAGGAAGCCCTTGAAACATAGAGATTATGAAGTAGACCTCGAATCCCGCTTGGGCAAGACTCAGGTTGTTACACCAGTTGCACCACTAAGCCAGCAGGCTGGATACTACTGCTCAGTTTGTGAATGTGTGGTAAAGGACTCTGCAAACTACTTGGATCATATCAATGGAAAGAAACATCAAAGAGCTTTGGGCATGTCTATGCGAGTAGAACGTGCTTCTCTCAAACAGGTACAGCTTAAGAATTAA 396 0.4545 MSNNSNNTVGVDNTFRRKFDREEYLERARERERQEEENRSKPKAKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLKQVQLKN. 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05704 131 SUPERFAMILY beta-beta-alpha zinc fingers 80 127 IPR036236 -
Seca1g05704 131 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Seca1g05704 131 FunFam zinc finger matrin-type protein 2-like 79 117 - -
Seca1g05704 131 Gene3D Classic Zinc Finger 79 117 - -
Seca1g05704 131 MobiDBLite consensus disorder prediction 14 44 - -
Seca1g05704 131 Pfam Zinc-finger of C2H2 type 85 109 - -
Seca1g05704 131 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 4 129 IPR040107 GO:0000398|GO:0005681
Seca1g05704 131 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05704 Seca-Chr1 160546574 160548524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05704 4 128 C2H2 Transcription Factor Family AT3G05760 82.400 4.00e-75 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca1g05704 zf-C2H2_jaz 9.4e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05704 K12848 - gmx:100527057 228.409