Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05697 ATGGTTTGCCAGGAAGAGTTATTGATTGAAAAAGTATGCGAGCTCTATGAACAAATTTCAAGTCTTGAGTCTCTCAAACCTTGCAAAAATGTCGACATGCTTTTCACCCAACTTGTCCTCACATGCATGCCACCTAGTCCCATAGATGTCACCAATCTCACCAAAACTGTTCAAGACATTAGATCCCATCTTATAAGGCTATGTGGTGAAGCTGAGGGCTATTTGGAGACCCATTACTCTTCCATCTTAGGCTCTTACCATGACAATCCCCTTGACCATCTCCATATTTTCCCTTACTATTCCAATTACCTCAAACTTGCTCTCCTTGAATTCACTATCTTAACCCAACACTGCACACATGTCCCTAACAAAATTGCCTTTGTGGGTTCAGGACCTCTTCCTCTTACCTCAATTGTCTTGGCATCCAATCACTTACCTTCCACCACTTTCCACAACTATGACATCGACCCTTCAGCCAATTCAAGTGCCCTGCGTTTGGTTTCCTCTGACCCTGACTTGTCAAAAAGAATGGTTTTTCACACCAATGATATCTTGGATGTGTCAAATGAATTGAAAGAGTATGAAGTTGTTTACTTGGCAGCACTTGTGGGTATGGACAAGGAAGAAAAGAATAAAATCATTGATCACTTGGCTAAACATATGGCCCCAGGTGCTCTTTTGATGCTAAGGAGTGCTCATGGGGCTAGAGCTTTTCTCTATCCTGTGGTTGATCCTTGTGATCTTCAAGGCTTTGAGGTCCTCTCTGTGTTTCATCCAACTGATGAGGTTATCAATTCAGTTGTCATAGCACGTAAATATCCTATGCCTATACACTCTCTTGAGCAAGGCCTTGGTTCTATCATCCTACCAAATAAATGCTCTGAGATTCAAGTCTTCAACCATGGGAATATGATTGAGGAATTGACAATTGAGGAGCAACTCTCATAA 948 0.4177 MVCQEELLIEKVCELYEQISSLESLKPCKNVDMLFTQLVLTCMPPSPIDVTNLTKTVQDIRSHLIRLCGEAEGYLETHYSSILGSYHDNPLDHLHIFPYYSNYLKLALLEFTILTQHCTHVPNKIAFVGSGPLPLTSIVLASNHLPSTTFHNYDIDPSANSSALRLVSSDPDLSKRMVFHTNDILDVSNELKEYEVVYLAALVGMDKEEKNKIIDHLAKHMAPGALLMLRSAHGARAFLYPVVDPCDLQGFEVLSVFHPTDEVINSVVIARKYPMPIHSLEQGLGSIILPNKCSEIQVFNHGNMIEELTIEEQLS. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05697 315 Pfam Nicotianamine synthase protein 5 274 IPR004298 GO:0030410|GO:0030418
Seca1g05697 315 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 124 274 IPR029063 -
Seca1g05697 315 PANTHER NICOTIANAMINE SYNTHASE 3 4 308 IPR004298 GO:0030410|GO:0030418
Seca1g05697 315 Gene3D Vaccinia Virus protein VP39 5 274 IPR029063 -
Seca1g05697 315 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 277 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05697 Seca-Chr1 160518959 160519906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05697 1 312 Nicotianamine Synthase Gene Family AT5G04950 62.500 1.24e-142 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05697 K05953 - gmx:100794250 542.347