Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05696 ATGGAAGAATTGAAACCTGTTACTGTTTTGTCTGCTACTGCCTCTGAATTGCATCTAGGATCAGTGGCTAATAGCTACCTCCAGCTTCATCAACACAATATTGTAACGGCCGGGTCGGATCGGCTCAAGATCCAGATCGCGAATCACCCTCTTTATCCAGATTTAGTGTCTGCATACATAGAATGCCAAAAGGTTGGAGCACCACCAGAACTAGCATCCCTTTTGGAAGAAATAGGACGAGAAATCCACCCCATGAATGCACCCTGTGAGATAGGGCATGGTGCTGAACTTGACGAGTTCATGGAATCATACTGCCAAGTTCTTCACAGATACAAAGAGGAGTTGTCGAAACCCTTCAATGAAGCGAGTTTGTTTTTGGCGAATATGGAATCGCAACTCAGCAACCTTTGTAAAGGAACACTGACAAAGTCTTCGGATAACAACTTCTCAGTGAGAGTGTTTTTGTATATATTTTGGTCAGATGAGGAATTATTAAGTTGCGGGGAAATCGAAGCAGTTGAAGGTCATGAATCTTGTGATAGTCACCCAGGTGATCAAAAGCTTAAAGAAATGCTCCTTCGTAAGTACAGTGGCCACTTTGGCAATTTGAGAAAGGAATTTCTAAAAAGAAGGAAAAAGGGTAAGCTGCCAAAAGATGCAAGGGTGACACTCATGGACTGGTGGAACACCCATCATAGATGGCCTTATCCTACGGAGGAGGAGAAAGTGCAGTTGTCAGACATGACTGGACTGGATCAAAAACAGATCAATAATTGGTTCATCAATCAGAGAAAACGGCATTGGAAACCAAATGAGGATATGCGATTTGCCATTCTGGACGGTGTAACTGACTGCGGCATAAGACCACCTATGTTTTTTTAG 882 0.4308 MEELKPVTVLSATASELHLGSVANSYLQLHQHNIVTAGSDRLKIQIANHPLYPDLVSAYIECQKVGAPPELASLLEEIGREIHPMNAPCEIGHGAELDEFMESYCQVLHRYKEELSKPFNEASLFLANMESQLSNLCKGTLTKSSDNNFSVRVFLYIFWSDEELLSCGEIEAVEGHESCDSHPGDQKLKEMLLRKYSGHFGNLRKEFLKRRKKGKLPKDARVTLMDWWNTHHRWPYPTEEEKVQLSDMTGLDQKQINNWFINQRKRHWKPNEDMRFAILDGVTDCGIRPPMFF. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05696 293 Gene3D - 205 277 - -
Seca1g05696 293 Pfam KNOX2 domain 91 137 IPR005541 GO:0003677|GO:0005634
Seca1g05696 293 Pfam KNOX1 domain 42 83 IPR005540 GO:0003677|GO:0005634
Seca1g05696 293 SMART KNOX1_2 40 84 IPR005540 GO:0003677|GO:0005634
Seca1g05696 293 CDD homeodomain 210 271 IPR001356 GO:0003677
Seca1g05696 293 Pfam Homeobox KN domain 227 266 IPR008422 GO:0003677|GO:0006355
Seca1g05696 293 ProSiteProfiles 'Homeobox' domain profile. 207 270 IPR001356 GO:0003677
Seca1g05696 293 Pfam ELK domain 188 208 IPR005539 GO:0003677
Seca1g05696 293 SUPERFAMILY Homeodomain-like 209 277 IPR009057 -
Seca1g05696 293 ProSitePatterns 'Homeobox' domain signature. 245 268 IPR017970 GO:0000981|GO:0006355
Seca1g05696 293 SMART HOX_1 209 274 IPR001356 GO:0003677
Seca1g05696 293 ProSiteProfiles ELK domain profile. 187 207 IPR005539 GO:0003677
Seca1g05696 293 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 58 276 - -
Seca1g05696 293 SMART ELK_2 187 208 IPR005539 GO:0003677
Seca1g05696 293 SMART KNOX2_2 87 138 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05696 Seca-Chr1 160507931 160514179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05696 42 280 Homeobox Transcription Factor Family AT1G23380 52.227 4.59e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca1g05696 KNOX2 1.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05696 - - gmx:100803095 403.675