Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05692 ATGGCGTCTCTGCAAACAAACGTCGATTCCAGTAATTCACAACGATCCAATCATAAGAAGCGCCGGAAAATCACCGCTGATCGCAATTCCCTCACTCTCATTCCTTGGAGATCCCAAACCAAGCAGCGGATCTACACCTCCAACCTCGTCGACGCTCTCCGCCGTAGCCGTTCGCCGCCGTCCAAGCCTATTTCCGGCCGCGAAGTTCGCGTGGCCGCCGACCGGATTCTGGCTGCCACAGCCAGGGGACGAACTCAGTGGAGCCGTGCGATTCTGGCGAGTCCGATCAGACGTTGGAAGCTCCAGTTGCACAAGAAGGTGAAGAAGGCTGCGAACGGATTGATGAAGAAGAGGAACCCGGAGATTCGGAGAAGGTTGCCGGCGGTGCAGAGGAAAGCGCGCGTTCTGAGTCGGTTAGTCCCTGGTTGCCGTAAGGTCTCGTTCCCGAATCTTCTGGAAGAAGCAACTGACTATATTTCGGCGTTGGAGATGCAAGTGCGGGCCATGACGGCTCTCACCGAGCTTCTCGCCGGTGGTGTGCCGCCGCCGCCCGGCTCGGCTCGAGTTGAGTTGAGTTGA 579 0.5786 MASLQTNVDSSNSQRSNHKKRRKITADRNSLTLIPWRSQTKQRIYTSNLVDALRRSRSPPSKPISGREVRVAADRILAATARGRTQWSRAILASPIRRWKLQLHKKVKKAANGLMKKRNPEIRRRLPAVQRKARVLSRLVPGCRKVSFPNLLEEATDYISALEMQVRAMTALTELLAGGVPPPPGSARVELS. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05692 192 CDD bHLH_AtIBH1_like 123 173 IPR044549 GO:0006355
Seca1g05692 192 MobiDBLite consensus disorder prediction 1 26 - -
Seca1g05692 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 182 IPR036638 GO:0046983
Seca1g05692 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 162 IPR011598 GO:0046983
Seca1g05692 192 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 37 176 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05692 Seca-Chr1 160438955 160439533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05692 29 169 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 53.289 2.28e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05692 - - gmx:100783462 209.149