Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05690 ATGTCAAGACGGCAGAAGAGCATTCGGATGAGGAAGGGCAAACGCGAACACACTCTCCTCAACAAGCGAAACCACCTTCTGCCTCTTCACCACCATCATCATGCATCTGACTTTACCCTCTTCACCACGTTGGAAGGTAATGATATTCCTGATTTGGTGCAAGGAATATGGTCTGAAGACCCTGCTGCACAAGTGGAGGCAACTACTGAGTTCAGAAAGCTACTATCAAATATAGGCAGCCCTCAAATTGATGAAGTCGTCAAGGAAGGTCTTGTCCCTAGGTTTGTGGAGTTTTTGGGAAGCAATGATTTACCCAATTTGCAGTATGAAGCTGCATGGACTCTGGCCTATATTACTCGTGGAAATTCTGAGAACACAAAAGTTGTAATTGAACAAGGTGCTGTTCCCCTGCTTCTGAAGCTTCTGGGCTCGAGTACCATTGACTTCACAGAAAAGGCACTATGGTGTTTGGGTAATATTGCTGGTGATGACTGGGGCAGTAGAGATTTGGTTCTTCATCATGGTGCACTCTTGCAATTACTGTCCCTGTTGAATCACTATACGACATTACCTTTGTCCTTGTTAAGAACTGCTACATGGACTTTATCTGCTTTCTGTCATGGAAAGCCTCCTCCACCTTTTGAACAGGTAAAGCTTGCTTTGCCTGTTCTTGGGCAACTCATCAATTTTAATGATAAAAATATCATGAGCAATGCATGCTGGGCTCTCTCTTATGTTACAGCCGATGCCCCAAATGAAAAAATCCAAGCTGTCATTGAAGCAGGAGTTTGTCCACGACTTATCCACTTTCTGCACTCGGATCCATCAAGTTCAGTTATTGAGCCTGCTCTTCGGACACTTGGAAATATTATTAACGGTGATGATGCTCAGACTCAGGTTGTACTTGACAACCAACTACTTCCTTGTCTTCACCATATTCTGACACAAAATCACAAAAAGAGCATCATGAAAGAAGCTTGTTGGACAATCTCAAATATAACAGCTAAGAATGAAGCTCAAATACAGGCTGTCATTGAGGCCAATATTATTCTTCCTCTTGTTAATCTTATTGACAATGCGGATTTTGACATCAAAGGGGAGGCTACCTGGGCCATCTACAATGCCATTTGTGGAGGATCTCATGATCAGATAAAGTTCCTGACTAGTCAAGGTTGCATTAAGGCACTATGTGATCTCTTGACCTGTCCGGACACAAATATTGTGAAGATTTGTCTGGAGGGGCTGGAGAGCATTTTAAAGGTGGGAGAAGCTATTGATGAGGAAACGAGACTAGAAGGTGGACTCAATGTTTATGCTCAAATGGTTCAAGATTGTGAAGGATTGGAAAAGATTGAAAATTTGGATAACTTCGACGACCATGAGCTTTATGTGCAGGCTGTGGACATTTTGGGGACATATTTTATTGATGTCTTGGAGGACGATTCATCGGATGGTGGAGATGGTTTTTATTAA 1473 0.4257 MSRRQKSIRMRKGKREHTLLNKRNHLLPLHHHHHASDFTLFTTLEGNDIPDLVQGIWSEDPAAQVEATTEFRKLLSNIGSPQIDEVVKEGLVPRFVEFLGSNDLPNLQYEAAWTLAYITRGNSENTKVVIEQGAVPLLLKLLGSSTIDFTEKALWCLGNIAGDDWGSRDLVLHHGALLQLLSLLNHYTTLPLSLLRTATWTLSAFCHGKPPPPFEQVKLALPVLGQLINFNDKNIMSNACWALSYVTADAPNEKIQAVIEAGVCPRLIHFLHSDPSSSVIEPALRTLGNIINGDDAQTQVVLDNQLLPCLHHILTQNHKKSIMKEACWTISNITAKNEAQIQAVIEANIILPLVNLIDNADFDIKGEATWAIYNAICGGSHDQIKFLTSQGCIKALCDLLTCPDTNIVKICLEGLESILKVGEAIDEETRLEGGLNVYAQMVQDCEGLEKIENLDNFDDHELYVQAVDILGTYFIDVLEDDSSDGGDGFY. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05690 490 SMART arm_5 337 377 IPR000225 GO:0005515
Seca1g05690 490 SMART arm_5 163 207 IPR000225 GO:0005515
Seca1g05690 490 SMART arm_5 209 248 IPR000225 GO:0005515
Seca1g05690 490 SMART arm_5 380 420 IPR000225 GO:0005515
Seca1g05690 490 SMART arm_5 251 292 IPR000225 GO:0005515
Seca1g05690 490 SMART arm_5 294 335 IPR000225 GO:0005515
Seca1g05690 490 SMART arm_5 122 162 IPR000225 GO:0005515
Seca1g05690 490 SMART arm_5 79 120 IPR000225 GO:0005515
Seca1g05690 490 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 90 133 IPR000225 GO:0005515
Seca1g05690 490 FunFam Importin subunit alpha 45 475 - -
Seca1g05690 490 Pfam Armadillo/beta-catenin-like repeat 252 290 IPR000225 GO:0005515
Seca1g05690 490 Pfam Armadillo/beta-catenin-like repeat 80 120 IPR000225 GO:0005515
Seca1g05690 490 Pfam Armadillo/beta-catenin-like repeat 122 161 IPR000225 GO:0005515
Seca1g05690 490 Pfam Armadillo/beta-catenin-like repeat 294 335 IPR000225 GO:0005515
Seca1g05690 490 Pfam Armadillo/beta-catenin-like repeat 381 415 IPR000225 GO:0005515
Seca1g05690 490 Pfam Armadillo/beta-catenin-like repeat 337 374 IPR000225 GO:0005515
Seca1g05690 490 Pfam Importin beta binding domain 3 69 IPR002652 GO:0006606|GO:0061608
Seca1g05690 490 SUPERFAMILY ARM repeat 3 478 IPR016024 -
Seca1g05690 490 PIRSF Importin_alpha 1 487 IPR024931 GO:0005737|GO:0006606|GO:0061608
Seca1g05690 490 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 133 175 IPR000225 GO:0005515
Seca1g05690 490 Gene3D - 46 475 IPR011989 -
Seca1g05690 490 PANTHER IMPORTIN ALPHA 3 478 - -
Seca1g05690 490 Pfam Atypical Arm repeat 436 481 IPR032413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05690 Seca-Chr1 160419564 160422553 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05690 90 359 U-box Gene Family AT1G23030 20.741 7.52e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05690 K15042 - aew:130779640 555.058