Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05679 ATGGCTGGTGGTGGTGGTATGGTTCCATTCCTGATAATGATTCTGGTGCAATTAGTATATGCAGGGATGAATATCACCTCCAAGCTTGCAATACAATCTGGCATGAATCCTCTTATCCTTGTTGCTTACAGGCAAATCTTTGCTACCATATCCATCATTCCCTTCGCTTATTGGCTCGAATGGAAATCAATGCCCAGGATGACAAAGCGCATTGTGTTTCAGATATTATTATCTTCATTAACAGGAGTTACAGGAAACCAGGTTCTGTATTTCGTGGGGCTAAAATATTCAACCGCTACAATTGCATGTGCGCTTACCAATTTGCTCCCAGCTTTCACTTTTATCCTTGCACTCATCTTCAGGCAAGAGAATTTGAGAATCAAGAAGACGGAAGGCATGGCAAAGGTGTTTGGGACAGTTCTGTGTGTGAGTGGAGCGGTGCTTTTATCATTTTACCATGGAAAAGTCATTGGTTTAGGCGAATCAAAAATTCACTGGAGCTATGCACAGAAAATGGAAGGAAGTAACTCCTCCGGTAAATCAAACTTGCTTCTAGGCCCTGTTGCCTTAATTGGTAGTGCTCTTGTTTGGTCAGCATGGTTCATAATTCATGCAGACATGAGCAAGAATTTTCCAGTTCCTTATACGAGCACCGCTTACATGTGCTTCTTGGCAAGTTTTCAGTGTGTGTTCATTGCCTTGTGTTTTGATCACAGTGTCTCAGCTTGGTCACTCCATGATGCTATGAGACTCACCTCTGCTCTTTATGCGGGAGTAATTTGTACTGGGCTAGCGTATTGTCTTATTTCGTGGACTATTGAGAGGAAAGGTGCTCTTTATGTCTCTGTGTATACCCCCTTGCAGCTTGTCCTCACCACTATTGTCAGCTGGGCTGTGCTTCAGGAGAAATTATATGTTGGAACTGCCATTGGGTCTCTCCTCATAGTTTTTGGGCTCTATGCTGTTCTGTGGGGAAAGAGCAAAGAGGTGAATGAGAAAGAGGATATTGAAGGGACAGAAGCAGAAGCAATGAAGGATAAGGAGAAGGGTATGAAGAATGACCTGGAATTGCAACCCTATGTGCCATCCAAGGGTAACCATAATATGGGGCTGTCTTTCACCAAACTCTTTAGCCGGCTCTTTGCCAAGAAAGAGATGCGTATTCTTATGGTAGGTCTTGATGCTGCTGGTAAGACAACAATCTTGTACAAGCTCAAGCTAGGGGAGATTGTCACGACCATTCCCACTATTGGATTTAATGTGGAGACTGTAGAATATAAAAACATTAGCTTCACTGTTTGGGATGTTGGTGGCCAAGATAAGATACGTCCTTTGTGGAGACACTATTTCCAAAACACACAGGGTCTTATCTTTGTTGTGGATAGCAATGATCGTGATCGTGTTGTTGAGGCTAGAGATGAGCTTCATCGAATGTTGAATGAGGATGAGTTGAGAGATGCTGTTCTCCTTGTATTTGCCAATAAGCAAGATCTCCCAAATGCCATGAATGCTGCTGAAATCACGGATAAGCTTGGTCTTCACTCTCTTCGTCAACGCCACTGGTACTCATGCATTTTTGTATATCCAGAGCACATGTGCTACCTCTGGGGAAGGACTCTACGAGGGACTGGATTGGCTGTCCAACAATATAGCAAATAA 1659 0.4334 MAGGGGMVPFLIMILVQLVYAGMNITSKLAIQSGMNPLILVAYRQIFATISIIPFAYWLEWKSMPRMTKRIVFQILLSSLTGVTGNQVLYFVGLKYSTATIACALTNLLPAFTFILALIFRQENLRIKKTEGMAKVFGTVLCVSGAVLLSFYHGKVIGLGESKIHWSYAQKMEGSNSSGKSNLLLGPVALIGSALVWSAWFIIHADMSKNFPVPYTSTAYMCFLASFQCVFIALCFDHSVSAWSLHDAMRLTSALYAGVICTGLAYCLISWTIERKGALYVSVYTPLQLVLTTIVSWAVLQEKLYVGTAIGSLLIVFGLYAVLWGKSKEVNEKEDIEGTEAEAMKDKEKGMKNDLELQPYVPSKGNHNMGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYSCIFVYPEHMCYLWGRTLRGTGLAVQQYSK. 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05679 552 SMART sar_sub_1 369 551 IPR006689 GO:0003924|GO:0005525
Seca1g05679 552 SUPERFAMILY Multidrug resistance efflux transporter EmrE 221 328 - -
Seca1g05679 552 Gene3D - 368 533 IPR027417 -
Seca1g05679 552 FunFam ADP-ribosylation factor 1 370 531 - -
Seca1g05679 552 Pfam EamA-like transporter family 185 323 IPR000620 GO:0016020
Seca1g05679 552 Pfam EamA-like transporter family 10 150 IPR000620 GO:0016020
Seca1g05679 552 PANTHER WAT1-RELATED PROTEIN 8 334 IPR030184 GO:0016020|GO:0022857
Seca1g05679 552 Pfam ADP-ribosylation factor family 373 522 IPR006689 GO:0003924|GO:0005525
Seca1g05679 552 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 150 - -
Seca1g05679 552 NCBIfam small GTP-binding protein domain 384 506 IPR005225 GO:0005525
Seca1g05679 552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 523 IPR027417 -
Seca1g05679 552 ProSiteProfiles small GTPase Arf family profile. 379 552 - -
Seca1g05679 552 CDD Arf1_5_like 386 522 IPR045872 GO:0003924
Seca1g05679 552 SMART arf_sub_2 369 549 - -
Seca1g05679 552 PRINTS GTP-binding SAR1 protein signature 387 410 IPR006689 GO:0003924|GO:0005525
Seca1g05679 552 PRINTS GTP-binding SAR1 protein signature 442 467 IPR006689 GO:0003924|GO:0005525
Seca1g05679 552 PRINTS GTP-binding SAR1 protein signature 487 508 IPR006689 GO:0003924|GO:0005525
Seca1g05679 552 PRINTS GTP-binding SAR1 protein signature 415 439 IPR006689 GO:0003924|GO:0005525
Seca1g05679 552 SMART rab_sub_5 386 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05679 Seca-Chr1 160342896 160352966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05679 7 366 Nodulin-like Gene Family AT1G09380 57.341 1.43e-142 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05679 - - gmx:100798142 559.296