Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05672 ATGAGATTCATCGTATCTGTCCTTAAAGTCAATTATTTTTCTCAAGATTTGAATATTATGCCAGCTGTAGTGCCTGCTAACTTGAATTTCTATACAGCGAGTAGCACAACTATTTTCTGTCTTCAACATGTGTGTTGTGCCTTGTTAATGACTATAAGCTATATGGCAGAACGGGTTGTTGGGCATGGATCATTTGGGGTTGTTTTCCAGGCTAAATGCTTGGAGACTGGTGAAACTGTTGCTATTAAAAAGGTACTTCAAGACAAGAGGTATAAGAATCGGGAGCTGCAAACAATGCGTCTTCTTGACCACCCAAACGTTGTCTGTTTGAAGCATTGTTTCTTTTCGACCACTGAAAAGGATGAACTATACCTTAATTTGGTACTTGAGTATGTTCCTGAAACAGTTTATCGCGTGATCAAACATTACAACAAGATGAACCAACGCATGCCACTGATATATGTGAAACTCTATACATACCAGATCTTTAGGGCATTATCTTATATTCATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTAGTTAATCCCCATACCCACCAAGTTAAATTATGTGACTTTGGAAGTGCAAAAGTCTTGGTCAAAGGCGAACCAAATATATCATACATATGTTCTAGATATTATAGAGCACCTGAACTTATATTTGGAGCAACTGAATATACTACAGCTATTGACGTTTGGTCTGTAGGTTGTGTATTGGCTGAGCTTCTGCTTGGACAGCCTTTGTTCCCTGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATCAAGGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAACTACACAGAATTTAAATTCCCACATATTAAAGCACATCCATGGCACAAGATCTTTCATAAGCGCATGCCACCAGAAGCTGTTGATTTGGTATCAAGACTACTGCAATACTCCCCTAACCTGCGGTGCAATGCTTTAGATGCCTTGACACATCCCTTCTTTGATGAGCTTCGTGATCCAAACACCCGCTTGCCAAGTGGTCGTTTCCTTCCACCATTATTCAATTTCAAATCTCATGAACTGAAGGGAGTCCCGGTTGAGACTTTGATGAAATTGATTCCAGAGCATGCGAGGAAGCAATGCCCGTTTCTTGGCTTGTGA 1173 0.4066 MRFIVSVLKVNYFSQDLNIMPAVVPANLNFYTASSTTIFCLQHVCCALLMTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVCLKHCFFSTTEKDELYLNLVLEYVPETVYRVIKHYNKMNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPHIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCNALDALTHPFFDELRDPNTRLPSGRFLPPLFNFKSHELKGVPVETLMKLIPEHARKQCPFLGL. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05672 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Seca1g05672 390 ProSitePatterns Protein kinases ATP-binding region signature. 60 84 IPR017441 GO:0005524
Seca1g05672 390 FunFam Glycogen synthase kinase-3 beta 46 133 - -
Seca1g05672 390 ProSiteProfiles Protein kinase domain profile. 54 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05672 390 CDD STKc_GSK3 51 341 IPR039192 -
Seca1g05672 390 Gene3D Phosphorylase Kinase; domain 1 47 133 - -
Seca1g05672 390 Gene3D Transferase(Phosphotransferase) domain 1 134 382 - -
Seca1g05672 390 Pfam Protein kinase domain 54 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05672 390 FunFam Shaggy-related protein kinase kappa 134 382 - -
Seca1g05672 390 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 51 384 - -
Seca1g05672 390 SMART serkin_6 54 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05672 390 SUPERFAMILY Protein kinase-like (PK-like) 52 364 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05672 Seca-Chr1 160283302 160287248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05672 58 343 MAP Kinase Gene Family AT3G59790 34.694 5.34e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca1g05672 Pkinase 3.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05672 K00924 - gmx:100795659 691.419