Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05668 ATGGGTTCTAATCTTAATGCTGAATTATCCAAGAAAACTAGCATTTTTAATCTCAAGGTTTGGGAAATAATTGCAATTGCTGTTGGATTGACCATTATAATTATCCTCTCTGTGCTATCACTTTGCCTTACTTCAAGGAAGAAATCTAGAAAAGCCAAGGACAGAATTCCTGTTAGTCAGATACCAACTGTATCAAAGGAAATCAAGGAAGTGAGGGTTGAGCAAGTATCAACAAATGGATTTGCTCCTCGTGATGGAATATTGCTTACCATTCATGATAAGTCCAGTGACAAGGAATCAGACAAAGTCATGGTTCATTTAGGTGTGGGGAAGATGATGAATGGGGATAGCAGCAGTCATTCTGATTCTTTTCAGCACATGGAGAAAGATGGAGGTGGTTCACTCTCACAGTCAGGAGAAGAAGGTAGCTCTGGCACAGTTGCAGTGTACAAGCACTCTTCTTCATACCCTATAACAGCTCCTTCACCTCTGAATGGCCTTCCAGAATTCTCTCACTTGGGTTGGGGTCACTGGTTTACCTTGAGAGATCTTGAACTTGCCACAAATCGTTTTGCCAAAGAAAATGTCCTTGGTGAAGGTGGGTATGGAGTTGTTTATAGGGGACAATTGATCAATGGGACTCCAGTGGCAGTTAAAAAGATACTCAATAATATCGGTCAAGCAGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGCCATGTCCGACACAAAAACTTGGTTCGCCTTTTGGGTTACTGCATTGAGGGAACTCACAGGATGTTAGTCTATGAGTATGTCAATAATGGAAACTTGGAGCAATGGCTTCACGGAGCTATGCGTCACCATGGATATCTTACCTGGGAAGCGCGAATCAAGATTCTCCTTGGCACAGCGAAAGCGCTTGCATATTTGCATGAAGCAATAGAGCCGAAAGTGGTACACCGGGATATCAAGTCAAGCAACATATTAATTGACGATGACTTCAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGTTATTGGGTGCTGGGAAGAGTCATGTCACAACGCGAGTTATGGGTACCTTCGGATACGTGGCTCCTGAATATGCAAATACTGGTCTTCTAAATGAGAAGAGTGATGTTTATAGCTTTGGTGTTTTGCTATTGGAAGGAATTACTGGAAGAGATCCAGTTGACTATGGTCGTCCAGCAGCTGAAGTGAATCTGGTTGATTGGCTGAAGATGATGGTTGGAAACAGGAGATCAGACGAAGTGGTTGACCCAAACATTGAGGTGAAGCCATCAACCAGAGCTTTAAAACGGGCTCTCTTAACTGCTTTAAGATGTGTAGATCCAGATTCTGAGAAAAGGCCCAAGATGAGCCAAGTTGCACGTATGCTGGAGTCAGAGGAATACCCTTTACCAAGAGAGGACCGAAGACACCGAAGAAGAAATCATGGGGGTAGTGCAGAAATTGAATCCCAGAGGGAATATTCTGACACAGACAGGAGTGAGATTCAGGGTTCTAGAGGGTAA 1521 0.432 MGSNLNAELSKKTSIFNLKVWEIIAIAVGLTIIIILSVLSLCLTSRKKSRKAKDRIPVSQIPTVSKEIKEVRVEQVSTNGFAPRDGILLTIHDKSSDKESDKVMVHLGVGKMMNGDSSSHSDSFQHMEKDGGGSLSQSGEEGSSGTVAVYKHSSSYPITAPSPLNGLPEFSHLGWGHWFTLRDLELATNRFAKENVLGEGGYGVVYRGQLINGTPVAVKKILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLEGITGRDPVDYGRPAAEVNLVDWLKMMVGNRRSDEVVDPNIEVKPSTRALKRALLTALRCVDPDSEKRPKMSQVARMLESEEYPLPREDRRHRRRNHGGSAEIESQREYSDTDRSEIQGSRG. 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05668 506 CDD STKc_IRAK 197 463 - -
Seca1g05668 506 MobiDBLite consensus disorder prediction 449 506 - -
Seca1g05668 506 MobiDBLite consensus disorder prediction 115 145 - -
Seca1g05668 506 Gene3D Phosphorylase Kinase; domain 1 173 266 - -
Seca1g05668 506 ProSitePatterns Protein kinases ATP-binding region signature. 197 220 IPR017441 GO:0005524
Seca1g05668 506 Gene3D Transferase(Phosphotransferase) domain 1 267 477 - -
Seca1g05668 506 SUPERFAMILY Protein kinase-like (PK-like) 175 470 IPR011009 -
Seca1g05668 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 313 325 IPR008271 GO:0004672|GO:0006468
Seca1g05668 506 SMART serkin_6 191 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05668 506 PANTHER OS01G0323000 PROTEIN 4 491 - -
Seca1g05668 506 MobiDBLite consensus disorder prediction 130 145 - -
Seca1g05668 506 ProSiteProfiles Protein kinase domain profile. 191 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05668 506 FunFam Putative receptor-like serine/threonine-protein kinase 267 478 - -
Seca1g05668 506 FunFam Putative receptor-like protein kinase 173 266 - -
Seca1g05668 506 Pfam Protein kinase domain 192 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05668 Seca-Chr1 160243957 160248612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05668 168 465 Trihelix Transcription Factor Family AT1G70460 49.835 1.61e-91 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Seca1g05668 Pkinase 9.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05668 - - gmx:100787014 887.486