Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05661 ATGGGCGGAGGTGGAGCGACACCTAACACAGAGGCACAGTACTCGACGGCGAAGATATCGGTGTGGTGGGATATAGAGAACTGTCATGTCCCCAAGGGTTCGGATCCCCATGCCATCGCACAGAATATTAGTTCAGCACTGGTTCGCATGAACTACTGTGGCCCCGTTTCCATCTCCGCCTACGGCGACACCACTCGCATCCCCGCCTCTGTACAGCACGCCCTTTCCAGCACCGGAATCTCCCTCAATCATGTTCCTGCCGGTGTGAAAGACGCAAGCGACAAGAAAATCCTTGTCGACATGCTGTTCTGGGCAGTGGACAATCCTGCACCTGCTAATTACTTACTAATTTCGGGTGATCGAGACTTCTCTAACGCTCTCCATCAACTGCGGATGAGGAGATATAATATTCTACTTGCACAACCTCAGAAAGCATCTGCACCCCTAGTTGCAGCTGCTAAGAGTGTATGGCTTTGGACTACTCTCTTAGCTGGAGGAACTCCTTTAACTAATGGTGAATCACAACAACTTGGTAATAATGGCCTCTTATCATCTTCTGACACCTTACAAATTCCAGTCACAAATGCTGCTCAGATACAGCAGCAAGTGGATTCCTATTCTGAAGTTCAAAATGCCGCACATGGAAATTCAAAATTTCCAAATGGAGGAAGGGGATTTGATTCTAGATATCAGGGAAAATCAACTTGGAGGAACCCAAGTCAACCAAATGGACCCAAACCAATGAATCCACCACCAGTTGGATTTCAAGATAATCATAATAACATAAACTCTTATCGACCTGGCAGCTATAATCCAAATGTTCCTCTAAGCGGACCTGCTACAAATTATGTTCGTGGCAATACTGATCAGTTATGGAGCAATAATGGTAATCTACAGGGCAATCATCAACATCCTTATTCCCAGCCATTAAGGCCAAACAATTTTCCGTTGCAACCTCCTTTTGCACCTAGTAATACATATGCTCCAAATTCCCGTAATTTTGCAACTTCACCGGTGCCACCTAGGACTGGTGGTCCCAACTTCATTACAGGACCACTCACAAATGGGCCAGATATTGGTAATCTGAACATTTCTGGATATCCAAATACTGTTCATAATCCGCGTACCACTCTGCAACGGAGTGGAGAGTTGAAACCAAATCACAACAGTAATGCTCCGCCTCCTGTAAGATCAACTGATGATAAAAATCAACCTACACCATTGACAGCAACGGGTAATAATAACCCTCCTGCTAATGGTATGTGGGGATCTCCAGGATGTCCTAAACCTTCCGAATTTGTACAAGGCCTTATAGGAGTTGTTTTACTTGCTTTGAACTCGCTAAAAAATGCAAAGATGATGCCAACTGAGGCAAATATAACTGATTGCATCCGTTATGGAGATCCTAAGCACCGCAACACTGATGTTAAGAAGGCTCTTGAGTGTGCTATTGAACAGCAGATGGTGGTGAAACAGAATTTAGGCGCTTTGCCTTTGTATGTTGGTAAGAATGATAAACTTTGGAAGTGTGTAAATCCTTTAGGTGGGAATCCTAAGCAGCACTCAAAAGAAACATGGGATGAAATTCAAAATTTTTTAACAACTTCTGCTGGAAGATCGGCAATAATGGCTACACAGTGCAAGTATGAAGCAGGTATTGTGATAAAGAACATGTGCTTTAAAAATCATGCTTTGGGTGATGTCCTTCAGATACTGAACATGTTGATTACCCATAAAAAATGGATTGTGCATCATCAGTCTGGCTGGCAACCACTTATCATTACTCTTCCTGAGACAAACCCTGATTCAGGGGTTGTAGCTGGCACATAA 1830 0.4383 MGGGGATPNTEAQYSTAKISVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISAYGDTTRIPASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTTLLAGGTPLTNGESQQLGNNGLLSSSDTLQIPVTNAAQIQQQVDSYSEVQNAAHGNSKFPNGGRGFDSRYQGKSTWRNPSQPNGPKPMNPPPVGFQDNHNNINSYRPGSYNPNVPLSGPATNYVRGNTDQLWSNNGNLQGNHQHPYSQPLRPNNFPLQPPFAPSNTYAPNSRNFATSPVPPRTGGPNFITGPLTNGPDIGNLNISGYPNTVHNPRTTLQRSGELKPNHNSNAPPPVRSTDDKNQPTPLTATGNNNPPANGMWGSPGCPKPSEFVQGLIGVVLLALNSLKNAKMMPTEANITDCIRYGDPKHRNTDVKKALECAIEQQMVVKQNLGALPLYVGKNDKLWKCVNPLGGNPKQHSKETWDEIQNFLTTSAGRSAIMATQCKYEAGIVIKNMCFKNHALGDVLQILNMLITHKKWIVHHQSGWQPLIITLPETNPDSGVVAGT. 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05661 609 Pfam NYN domain 18 154 IPR021139 GO:0004540
Seca1g05661 609 Pfam OST-HTH Associated domain 546 594 IPR025677 -
Seca1g05661 609 CDD PIN_limkain_b1_N_like 18 142 - -
Seca1g05661 609 MobiDBLite consensus disorder prediction 207 266 - -
Seca1g05661 609 MobiDBLite consensus disorder prediction 353 416 - -
Seca1g05661 609 Gene3D - 10 161 - -
Seca1g05661 609 PANTHER LIMKAIN B LKAP 14 491 IPR024768 GO:0005777|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05661 Seca-Chr1 160190947 160193805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05661 11 198 C2H2 Transcription Factor Family AT5G61190 71.579 6.85e-85 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05661 - - gmx:100794608 1073.54