Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05659 ATGGATTGTCTGGGTATTCGAAGAAACAATTATAATGGAAGGCATGATGATTCAAAAGAGAAAGAGGAGTTTATTTTAAACATAGTGATCATGGTGGTTTCCATGTTGCTGATCGCATTGGTCACCATCGCTGTTGTTGCCAACATGGACGGTTCCAAACAAGGAGCAGGAACTATGAAGACCCTTCTCTCTGTTTGTGGAAAAACAGAGGAACCAGAAAGTTGTGTCCATGTCTTAAAAAATGTTGGTGAAAGAGCCACAGTTTTGGATTATGTTAAAGCTTCTATCAATGCAACCCTCGAAGAAATGCTGGTTGTGAACATGCCTAAACCTTATCTTGAAAAGAGCCTCACACCTCTACAGCAAATGTCATATAGAGATTGTTTGGAACTCTTAATTTTGGGAAAGGAAGAACTAGAATCCTTGTATACAATGATTACAAATTCGTTTGCTAACATGTCCATAATAGACCCTGATGATGTTATCAACAGCCTAAGTGCTGTCATTTCATACCAACAAACTTGTTCTGATTTGTTAATGAGAACAAACAGCTATGAAATTTTGGGGTATTCATTGAAAATACCAATTATGGTTACAAGAATAACCTTAGCCATTGTTAATAATTTCAGTGAGTGGCCTAAAAATGGGGACCACAAGCAGAATGAAATTCCAACATTGTTTTCCGGAGCAGAGCGCCAATTGATAGAGTTTCAAAGAAATGTTGGTGATAAGCAGCCATATGCAGTTGTGGCTCAAGATGGAAGTAGCCAATTCTCAACCATTTCTGAGTCACTCAATGCATGCTCAAAGAATAACCAGAGTCCTTGTATTATTTACGTTAAAAAGGGTAAATATGAGGAAAGAGTGGTGGTTCCTAAGGATCTAAAGCAAGTTGTCATGTATGGTGATGGCCCTGATAATACCATTGTCAGTGGAATCACCACAAGAGACCCCAACATGGTTACAACCACTCTCCGGGCAGCTACTTTTGTGGTATTGGGGAAAGGGTTTATATGCAAAAATATGGGTTTCACTGCTCCAGCTGCTATTATAGGAGCACCAGCACTTCTTGTCTTTGCTGATCATGCAGCATTCTTCAACTGCAAAATAGATGGTGAGGAAGGGAGCCTCTATGCAGTGGCCCAACGCCAATTCTACAGAGATTGTGAGATTCATGGGAGTGTGGACATCATCAAAGGAGACTCTGCAACTCTAATTCAGAACTCACAAATCATTGTGAAGCCTAGAAATTCTTCTCATTCTGTTTTAAGCAAAAATGTGGTAACTGCTCAATCAAGGTTGGACAAGTATGAAAGAACTGGTTTTGTGATTCAAAACTGCAGCATCACAGCACAAGGGGAAGGTGGCAATAGTCTTGTTGCTACAACTTATTTGGGCACCCCATGTAATGAATATTCAAGAACAATCATAATGGAATCATTTTTAGGAGATGTGATAAATCCAGAAGGGTGGTGCAAATGGAGTGACAACTATGGCATTGAAACAGCAACATTCCGTGAGTTTAATAACAGAGGGCCTGCTGCAAAAACTATTACGAGGGTCAATTGGGACAGCTACCGAACAATCATTCAGAGAAGTGAAATGGCGAGTTTCACAGCTACTCAATTTCTTGAATCAGAAAAATGGTTGCAAAGTTCAGGAATTCCGTACGATTATGGATTTGTTTACCATAAGGAAAATGATGAGTATACACAACATGGGGCTGTGCGCAACCATGGATAG 1743 0.3987 MDCLGIRRNNYNGRHDDSKEKEEFILNIVIMVVSMLLIALVTIAVVANMDGSKQGAGTMKTLLSVCGKTEEPESCVHVLKNVGERATVLDYVKASINATLEEMLVVNMPKPYLEKSLTPLQQMSYRDCLELLILGKEELESLYTMITNSFANMSIIDPDDVINSLSAVISYQQTCSDLLMRTNSYEILGYSLKIPIMVTRITLAIVNNFSEWPKNGDHKQNEIPTLFSGAERQLIEFQRNVGDKQPYAVVAQDGSSQFSTISESLNACSKNNQSPCIIYVKKGKYEERVVVPKDLKQVVMYGDGPDNTIVSGITTRDPNMVTTTLRAATFVVLGKGFICKNMGFTAPAAIIGAPALLVFADHAAFFNCKIDGEEGSLYAVAQRQFYRDCEIHGSVDIIKGDSATLIQNSQIIVKPRNSSHSVLSKNVVTAQSRLDKYERTGFVIQNCSITAQGEGGNSLVATTYLGTPCNEYSRTIIMESFLGDVINPEGWCKWSDNYGIETATFREFNNRGPAAKTITRVNWDSYRTIIQRSEMASFTATQFLESEKWLQSSGIPYDYGFVYHKENDEYTQHGAVRNHG. 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05659 580 SMART PMEI_2 57 205 IPR006501 GO:0004857
Seca1g05659 580 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 209 IPR035513 -
Seca1g05659 580 SUPERFAMILY Pectin lyase-like 247 560 IPR011050 -
Seca1g05659 580 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 210 IPR035513 -
Seca1g05659 580 FunFam Pectinesterase 4 244 561 - -
Seca1g05659 580 PANTHER PECTINESTERASE 34 551 - -
Seca1g05659 580 CDD PMEI-like_3 64 210 - -
Seca1g05659 580 Gene3D - 242 561 IPR012334 -
Seca1g05659 580 Pfam Plant invertase/pectin methylesterase inhibitor 64 180 IPR006501 GO:0004857
Seca1g05659 580 Pfam Pectinesterase 248 546 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05659 Seca-Chr1 160182613 160184664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05659 13 562 Carbohydrate Esterase AT3G05610 33.390 4.55e-88 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05659 K01051 - gmx:102665007 709.523