Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05656 ATGCACTCAGTGAATATATCTTTACATCTGATGTATGCTTCCCGTTCCTTAGGTAGATACAACATGGACTATCGATGGACCAGTGGTAGGCAGGAATCTGGTGGCCGTGATAGGAGGCAATATAAAAAGGAACAGGCATATGAAGATTCCCTCATTGAGGATTTGTCAGAGGATTTTCGTTTGCCAATCAACCACAGGCCAACAGAAAATGTTGATCTGGACAATGTAGAGCAAGCATCACTGGACACACAGTTAACATCATCTAATATTGGCTTTAAGCTTCTCCAAAAGATGGGATGGAAAGGAAAGGGTCTTGGGAAGGATGAACAAGGAATCATTGAACCAATAAAATCTGGGATGAGAGATCCAAGATTGGGGGTTGGTAAACAAGAAGAAGATGATTTTTTCACTGCAGAAGAAAATATCCAACGAAAAAAACTTGATGTTGAGTTGGAGGAGACAGAGGAACATGCGAGGAAGCGGGAGGTCTTGAGAATTTCCTGCAGTTTTTATTACCTGGTGGCTTCTTCTGCCTGCTTCGTGCACATTATGAAAATTCAGGTTTTAGCTGAACGTGAGCAAAAAATTCAAACCGAGGTGAAAGAAATCCGAAAGGTGTTTTATTGTGATCTCTGCAACAAGCAATACAAATTGGCAATGGAATTTGAAGCACACTTGAGCTCATATGATCACAATCACAGGAAGCGTTTCAAACAAATGAAGGAAATGCATGGTAGTAGTAGTCGAGATGATAGGCAAAAGCGAGAGCAGCAGCGTCAAGAGAGAGAAATGGCTAAGTTCGCTCAAATTGCTGATGCTCAAAAGCAGCAAAGGCTTCAACTGCAACAAGAGTCTGGATCAGCGACAGTTTCCACTGAATCTAGAACTGCCACTGCACTTACAGATCAGGAGCAGCGGAATACTTTGAAGTTTGGGTTTTCTTCTAAAGGCAGTGCTTCCAAGGTATGTCCACCTTGTTATCAAAACATTGTTGGTGTGAAGAAGCAAAATGTTGTGAAGAAGCAAAATGTTCCAATGTCCTCAATATTTAGTAACGATAGTGATGAAGAGTAA 1074 0.4134 MHSVNISLHLMYASRSLGRYNMDYRWTSGRQESGGRDRRQYKKEQAYEDSLIEDLSEDFRLPINHRPTENVDLDNVEQASLDTQLTSSNIGFKLLQKMGWKGKGLGKDEQGIIEPIKSGMRDPRLGVGKQEEDDFFTAEENIQRKKLDVELEETEEHARKREVLRISCSFYYLVASSACFVHIMKIQVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGSSSRDDRQKREQQRQEREMAKFAQIADAQKQQRLQLQQESGSATVSTESRTATALTDQEQRNTLKFGFSSKGSASKVCPPCYQNIVGVKKQNVVKKQNVPMSSIFSNDSDEE. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05656 357 SMART G-patch_5 85 130 IPR000467 GO:0003676
Seca1g05656 357 Pfam G-patch domain 88 128 IPR000467 GO:0003676
Seca1g05656 357 Pfam Zinc-finger double-stranded RNA-binding 207 234 IPR022755 -
Seca1g05656 357 MobiDBLite consensus disorder prediction 278 303 - -
Seca1g05656 357 SUPERFAMILY beta-beta-alpha zinc fingers 205 241 IPR036236 -
Seca1g05656 357 ProSitePatterns Zinc finger C2H2 type domain signature. 209 231 IPR013087 -
Seca1g05656 357 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 22 357 - -
Seca1g05656 357 ProSiteProfiles G-patch domain profile. 87 132 IPR000467 GO:0003676
Seca1g05656 357 MobiDBLite consensus disorder prediction 238 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05656 Seca-Chr1 160158173 160161765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05656 22 357 C2H2 Transcription Factor Family AT5G26610 57.817 7.66e-120 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05656 - - gsj:114407513 558.91