Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05654 ATGGCCGACGAAAGCACAGCTACCTGTATCGACATCCTCCTTGCCATCATCCTCCCTCCTCTTGGTGTCTTCCTCAAATATGGCTGCAAGGTGGAGTTCTGGATCTGTTTGGTACTCACCCTTTTTGGCTATATTCCTGGAATTATCTATGCTGTCTATGCCATTACCAAGTGA 174 0.4713 MADESTATCIDILLAIILPPLGVFLKYGCKVEFWICLVLTLFGYIPGIIYAVYAITK. 58
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05654 57 PANTHER HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED 6 57 IPR000612 GO:0016020
Seca1g05654 57 ProSitePatterns Uncharacterized protein family UPF0057 signature. 13 28 IPR000612 GO:0016020
Seca1g05654 57 Pfam Proteolipid membrane potential modulator 9 55 IPR000612 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05654 Seca-Chr1 160134421 160135917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05654 5 57 RCI2 Gene Family AT3G05890 81.132 3.28e-27 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05654 - - gmx:100792684 112.079