Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05652 ATGCAACCCAGCATGCACCTTGTGGGGAAATCACACAGATTCTATCTGCCTCTAATGGAGAGGATAGATCCAATTATGTCTAGCAATAGTTCAACCATAATGAATTTCTCCCATTTTGCAAAACCTGCTGCCCTTGTGAAAGCTAATCTTCAGAACATGGCCTTGACTTCTGGTTTGTCTTCACCAAGATCAGAAAGTGTGGGAATAAAGAATAAAGGTGCTGCTGCAACTAGAATCAATGCTCCTGAATCAACAAAAGTTGATTTAAGTGGCGAATGTCCGAAGAAATCAACCATGCATAATCATCAGGTTATGGAGCCATCCAAGGTTGATTTGAAACCATTGGAGCCAAAATCTCTTGAGCAGGATGCTGCTGTTGCTGCAAAGTCTGGTGCTGCTTGCAAAGAAGATGTGTCTAAGATTGATCAAACTTCCAATAAAATTCTTGATGAAAGTGGCAGAAAAAGACATGAAGCTTTTGAAAGAAGTATGGAGCCAGCAGTAGTATCTTCCTCTGTTTGCTCTGCCAATGGTGCAGGGAGAGGTTCAGACGACCCAGATCAAAGTTTGAAGAGAAAAAGTCATGACACTGAGGACTCTGAATGGCATAGTGAAGATGTTGAGGAAGAATCAGTGGGTCTTAAAAAGGCAACTCGTGCACGAGGGGGTATGGGTTCCAAGAGAAACCGTTCAGCTGAAGTGCATAATCTATCTGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGCGTGCGTTACAAGAACTCATACCAAATTGCAATAAGGCGGATAAAGCTTCTATGCTGGATGAGGCCATTGAGTATCTTAAAACACTTCAATTCCAACTTCAAATCATGTCAATGGGAGGTGGTTTATATATGCCTACAATGATGTTACCTCCAGGAATGCAGCACATGCATGCACCACATATGTCTCCTTTTTCACCTATGGGTGTTGGCATGCAAATGGGGTTGGGAGTGGGTTATGGAATGGGCATGCCTGACATTAATGATGGATCTTCTAGATTCCCAATGGTTCAGATGCCCCAAATGCAAGGAACTCATCTACATACATCTGGATCCACTGCTTTGCATGGGATGGCAAGGTCAAATCCTCAAGTGTTTGGACTTCCTGGTCAGGGACTCCCCATGTCAATGCCGTGTGCTCCAATGTTTTCTTTTCCAAGAGAGCCTCCTATGAACCCATCAGTTGTAGGACTAAATGCCTGTGGAACATCAGGACATAAGGAAACTGTGGAATCAGCTTCAGCTTCTACCTTAAAGGATCCAATGCCAAATGTGAACTCACAAGCTATACAAAATGCTGGTGGTTGTAACTCAACAAATCAGATGTCTAAACAGTTGTTATTGTGCCACTGCTAA 1383 0.4302 MQPSMHLVGKSHRFYLPLMERIDPIMSSNSSTIMNFSHFAKPAALVKANLQNMALTSGLSSPRSESVGIKNKGAAATRINAPESTKVDLSGECPKKSTMHNHQVMEPSKVDLKPLEPKSLEQDAAVAAKSGAACKEDVSKIDQTSNKILDESGRKRHEAFERSMEPAVVSSSVCSANGAGRGSDDPDQSLKRKSHDTEDSEWHSEDVEEESVGLKKATRARGGMGSKRNRSAEVHNLSERRRRDRINEKMRALQELIPNCNKADKASMLDEAIEYLKTLQFQLQIMSMGGGLYMPTMMLPPGMQHMHAPHMSPFSPMGVGMQMGLGVGYGMGMPDINDGSSRFPMVQMPQMQGTHLHTSGSTALHGMARSNPQVFGLPGQGLPMSMPCAPMFSFPREPPMNPSVVGLNACGTSGHKETVESASASTLKDPMPNVNSQAIQNAGGCNSTNQMSKQLLLCHC. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05652 460 PANTHER TRANSCRIPTION FACTOR PIF3 19 452 IPR044273 GO:0003700|GO:0006355
Seca1g05652 460 CDD bHLH_AtPIF_like 230 292 IPR047265 -
Seca1g05652 460 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 279 IPR011598 GO:0046983
Seca1g05652 460 MobiDBLite consensus disorder prediction 145 163 - -
Seca1g05652 460 MobiDBLite consensus disorder prediction 226 245 - -
Seca1g05652 460 Gene3D - 225 287 IPR036638 GO:0046983
Seca1g05652 460 SMART finulus 236 285 IPR011598 GO:0046983
Seca1g05652 460 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 227 289 IPR036638 GO:0046983
Seca1g05652 460 MobiDBLite consensus disorder prediction 145 245 - -
Seca1g05652 460 Pfam Helix-loop-helix DNA-binding domain 234 280 IPR011598 GO:0046983
Seca1g05652 460 FunFam Basic helix-loop-helix transcription factor 225 288 - -
Seca1g05652 460 MobiDBLite consensus disorder prediction 185 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05652 Seca-Chr1 160111321 160116011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05652 23 352 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 42.687 9.95e-61 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g05652 HLH 7.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05652 K12126 - gmx:100794974 568.54