Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05650 ATGGGAAGACATTCTTGCTGCTACAAGCAGAAGCTTCGTAAAGGCCTCTGGTCTCCAGAGGAAGATGAGAAGCTTCTGAATTACATCACTAAACATGGTCATGGATGTTGGAGCTCAGTTCCAAAACTAGCTGGTTTGCAGAGGTGTGGGAAGAGCTGCAGATTGAGGTGGATAAATTACCTGAGGCCTGATTTGAAGAGAGGAGCATTCTCTCAGCAAGAAGAGGATTCCATAATTGAACTTCATGCAGTCCTTGGCAACAGGTGGTCTCAGATTGCAGCTCAGTTACCAGGAAGAACTGACAATGAGATAAAAAATCTCTGGAATTCTTGCCTCAAGAAGAGGCTTAGACAAAGAGGCATTGACCCAAACACCCACCAACCACTCTCTGAGGTTGAGAAAGACAATGACAAGCCACTCACAGCTAACAAAAGCAACAATCTGCAGAAAGGATCCAATGAGGTGAGTCTTGTTGTTGAGGCATCAAAACCAAAGCCAAATCCTCCTATGCCTATGGAAAGATACCCCCTTGAAATCTCTTCTACCTCCAAGATCAGCAGCAATTTAACACCCACACAGGAATTATTCTTAGATAATAACAGGTTTAGTACCTGTCATGACAGCTCCATGACTAGTTGCAGACCTTCTGATATGGTGGGAGGATATTTCCCTTTCCAACAGCTTAACTTTGGAACAAACATGGGGCTCACTACTGCAAATCCCAACAGCACCTCCTCATCACTTTGCTTCATGCCACCAGGTTCAACTTCCTCCCAAATGATGTCAGACCTCAATTCAACCATGCTCCATTCTGTTTTCCCAAAACATGTAGTAAAGCCAACTGTCAGCCTGCAATCATCCATATCCTCTGGAGATATAGAAGGGGTACAGAACTGGGAAGGCAGTACCTTCAGTAACAAAAGCAATGGAAGCAGTAACAGCAGCAATAATAATGCCAATATCCAATTACAAAACAGCACTAACTTTCTTGACAGCAGCACCATAACATGGGGGCTTCCTGCAGAGTCTGTCAAACCAGATAGAGATGGTCATGGTCATGTAGCTTTACAAGGTGTAACAGAACAAGAAGACATTAAATGGTCTGAGTATCTGAACACTCCGTTTTTTCTGGGAAACACAGTGCATCAGCAGCATCAGGGTGGTACCACTACTACTCAATGTATCTACAGTAGTGATGAGGTTAAACCAGAAACAGCTGGTAGCTTCATTACAGATGAATCAAGTACCACTTGGCATCATCATAGCCATATTCAACCTTCTGATATATATAGCAAAGATCTACAGAGATTTTCATTGGCTTTTGGACAAACCCTTTAG 1338 0.432 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEEDSIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQRGIDPNTHQPLSEVEKDNDKPLTANKSNNLQKGSNEVSLVVEASKPKPNPPMPMERYPLEISSTSKISSNLTPTQELFLDNNRFSTCHDSSMTSCRPSDMVGGYFPFQQLNFGTNMGLTTANPNSTSSSLCFMPPGSTSSQMMSDLNSTMLHSVFPKHVVKPTVSLQSSISSGDIEGVQNWEGSTFSNKSNGSSNSSNNNANIQLQNSTNFLDSSTITWGLPAESVKPDRDGHGHVALQGVTEQEDIKWSEYLNTPFFLGNTVHQQHQGGTTTTQCIYSSDEVKPETAGSFITDESSTTWHHHSHIQPSDIYSKDLQRFSLAFGQTL. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05650 445 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca1g05650 445 Gene3D - 11 67 - -
Seca1g05650 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca1g05650 445 MobiDBLite consensus disorder prediction 299 320 - -
Seca1g05650 445 Gene3D - 68 146 - -
Seca1g05650 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Seca1g05650 445 MobiDBLite consensus disorder prediction 119 154 - -
Seca1g05650 445 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Seca1g05650 445 CDD SANT 17 61 IPR001005 -
Seca1g05650 445 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca1g05650 445 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca1g05650 445 SMART sant 66 114 IPR001005 -
Seca1g05650 445 SMART sant 13 63 IPR001005 -
Seca1g05650 445 PANTHER MYB DOMAIN PROTEIN 55 1 328 - -
Seca1g05650 445 FunFam MYB transcription factor 68 140 - -
Seca1g05650 445 CDD SANT 69 109 IPR001005 -
Seca1g05650 445 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca1g05650 445 FunFam Myb transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05650 Seca-Chr1 160092232 160093969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05650 1 445 MYB Transcription Factor Family AT1G09540 46.336 1.32e-113 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca1g05650 Myb_DNA-binding 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05650 K09422 - gmx:100788976 589.726