Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05647 ATGGTTTGGGTTTTTTCTTCTTTTCTTTCTAAATTGGTGAGCAGCGTCAATAGAAAAAGGGAAGTTGAAGGTGATGATGAAGAGAGTGATAGAGATAGAGTACATGAGGTAGGATTTCAACTAAGTCTATATAGTAGCTCCGCATCTGTAGCAGAACAGATTCCATTCTTCCTTGTAGGGCTTGATCATCTTATTTTCATGATTCCAAGTGCAGTTCAGGTGACAATGTTCCCCTCAAGGCCTAGCCAATCATCCAGCAATAATTCAGGTAGATCAAGACACAGTGCTAGGATTATTGCTCAGACCACTTTAGATGCAAAACTCCATGCAACTTTTGAGGAGTCTGGTAGTTCCTTTGACTACTCCAGTTCGGTGCGATTTTCTCCTGGTACAGATACAGCTAGTGGAGACCATCAAGCAAGTTCTGACAGAGTAACAATTGCTTACCTCCATCAGATACAGAAAGGGAAGCTGATCCAGTCTTTTGGGTGCTTGCTAGCTTTAGATGAGAAAACACGCAAAGTCATTGCTTACAGTGAGAATGCACCTGAAATGCTGACTATGGTTAGTCATGCTGTCCCTAATGTTGGTGACCACCCTGCTCTTGGCATTGGCACTGACATAAGATCTATTTTCACCTCCCAAAGTGCTTCTACATTTCAGAAGGCACTAGGATGTGGGGAGGTTTCACTTAACCCCATCCTAGTTCATTGCAAGACCTCTGGGAAGCCCTTTTATGCAATTATCCATCGTGTGACTGGTAGTTTGATTGTTGATTTTGAGCCAGTTAATCCTCATGAACATGGAGCTCCCACAACTGCAGCAGGTGCCTTGCAATCTTACAAGCTTGCAACAAAATCAATAAACCGATTGCAATCTTTGCCTAGTGGGAGCATGGAAACACTCTGTGATACAATGGTTCAAGAAGTTTTTGAACTCACAGGTTATGACAGAGTAATGGCTTATAAATTTCATGAGGATGATCACGGGGAAGTGATTGCTGAGGTCAAAAAGCCAGGCCTAGAGCCTTATCTGGGTTTGCACTATCCAGCCACTGATGTTCCCCAGGCTACACGCTTTTTATTTATGAAGAACAAGGTCCGTATAATAGTTGATTGTAGTGCAAAGCATGTAAAGGTGATTCAAGACAAAAATATTCCATTTGATTTAACTTTGTGTGGATCAACCTTAAGGGCTCCTCATAGTTGCCATTTGCAATACATGGAGAACATGAAAGCAAGTGCTTCCCTGGTTATGGCAGTTGTGGTCAATGACAGCAATGAAGATGGTGATAGCTCTGATGCTGTTCAACCACAAAAGAGAAAGAGGCTCTGGGGTTTAGTTGTTTGCCATCATATTACCCCCAAGTTTGTTCCCTTTCCTCTTAGATATGCTTGTGAATTTCTGGCACAAGTATTTGCCATCCATGTTAACAAAGAAATAGAGTTAGAATATCAGGTTATTGAGAGGAATATCCTGCGCACCCAAACCCTCTTGTGTGATATGTTGATGCGAGATGCACCCCTAGGTATTATATCACAGAGCCCTAATATAATGGATCTTGTGAAATGTGATGGAGCAGCTCTCTTGTATAAGAACAATGTATGGAGATTAGGGGTAGCACCGAGTGAATCGCAGATACGGGAGATTGCTTTATGGCTCTCTGAGTGCCATAAGGATTCCACAGGTTTGAGTACAGATAGCTTGTCTGATGCAGGGTTCCCAGGGGCTGCTGCTCTTGGTGATATTATATGTGGAATGGCATCTGTGAGAATATCTTCAAATGACATAGTTTTTTGGTTTCGATCACACACTGCTGCAGAAATCAGATGGAGTGGTGCAAAGCATGAACCTGGTGATAAGGATGATGGTAGGAAGATGCATCCAAGATCGTCATTCAAGGCTTTCCTTGAAGTTGTGAAGACAAGGAGCTTACCATGGAAGGACTATGAAATGGATGCTATTCATTCATTGCAGCTGATACTGAGAAATGCATTCAAAGATACAGAGATTATGGATATAAGCACAAATGCTATCAATACAAGACTAAGTGATTTGAAGATTGAGGGGATGCAAGAGCTGGAAGCAGTAACAAATGAGATGGTTAGGTTAATTGAAACAGCAACAGTGCCAATTTTTGCAGTTGATGTAGATGGGATGGTCAATGGATGGAATGCAAAAATTTCTGAGTTGACAGGTTTTCCAGTTGAGGAAGCTGTTGGGAAACATTTACTCATGCTTGTTGACGATTTTTCAACAGATAGAGTCAAGAAGATGTTGGACATGGCACTGCAGGGTGAAGAAGAGAAGAATGTCCAATTTGAGATGAAAACACATGATTTGAAGATTGATTCTGGTCCTATCTGCTTGGTAGTTAATGCTTGTGTAAGCAGAGATCTTCAACATAATGTTGTGGGAGTTTGTTTTGTAGCCCAAGATATAACTATTCAGAAAACATCCATGGACAAATTCACCCGAATTGAAGGTGATTACAAAGCAATTGTACAGAACCCAAACCCGTTGATCCCCCCAATATTTGGCACCGATGAATTTGGCTGGTGTTGTGAATGGAATTCAGCTATGACTAAATTAACTGGATGGAAGCGAGAGAAGGTGATGAATAAAATGCTTTTAGGAGAGGCTTTTGGGACCCAGATGGCTTGTTGTCGTCTAAAGAATCAAGAAGCTGTTGTTAATTTTAGTATTGTACTTAATAAAGCCGTGACTGGTTTGGAAACAGAGAAAGTTTCTTTCGGTTTCTTCACTCGGAATGGGAAGTATGTAGAATGCCTTCTTTCTATGAGTACGAAAGTGGACATAGAGGGTGTAGTTACTGGAGTCTTCTGCTTCTTGCAGCTAGCTAGTCCAGAGCTGCAACAAGCATTACATATTCAGCACCTATCTGAACAAACTGCCTTGAAGAGACTAAAAGCTTTAACTTACATGAAAAGGCAAATCCGAAACCCTTTATGTGGAATTTTGTTCTCCCAGAAACTGTTAGAGGGTACTGAGTTGGGAACTGATCAAAAACAACTTCTGCATACTGGCACTCAGTGCCAACGCCAACTTAGCAAAATTCTGGATGACTCGGACCTTGACAGCATCATCGATGGCTACTTGGATTTGGAGATGGTTGAATTCACTCTGCAGGAAGTCTTGGTTGCCTCCCTAAGTCAAGTCATGACAAAGAGTAGTGCAAAGGGTATCCAAGTAGTCAGTGATGTTGCAGAGGAGATCACAACAGAAACCTTATATGGTGATAGTCTTAGGCTTCAGCAGGTCTTAGCTGACTTTTTATTGATTTCCATCAATTCTACACCAACTGGAGGTCAGGTTGTTGTATCTGCCTCTTTAACCAAAGATTGTTTAGGGAAATTAGTCCAACTTTCTTATTTGGAGCTCAGCATAACACATGATGGTTTTGGGGTACCAGAAGCATTGCTGAACCAGATGTTTGGACGTGATGGACATGAATCTGAAGAGGGAATTAGCCTGCTCATCAGCAGAAAGCTGCTAAAGCACATGAGTGGAGATGTACGTTATATAAGAGAATCAGGCAAATCATCTTTCATCTTGTCTGTTGAACTTGCCATGTCTCATAAATTGGGGGCTTAA 3615 0.4158 MVWVFSSFLSKLVSSVNRKREVEGDDEESDRDRVHEVGFQLSLYSSSASVAEQIPFFLVGLDHLIFMIPSAVQVTMFPSRPSQSSSNNSGRSRHSARIIAQTTLDAKLHATFEESGSSFDYSSSVRFSPGTDTASGDHQASSDRVTIAYLHQIQKGKLIQSFGCLLALDEKTRKVIAYSENAPEMLTMVSHAVPNVGDHPALGIGTDIRSIFTSQSASTFQKALGCGEVSLNPILVHCKTSGKPFYAIIHRVTGSLIVDFEPVNPHEHGAPTTAAGALQSYKLATKSINRLQSLPSGSMETLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEVKKPGLEPYLGLHYPATDVPQATRFLFMKNKVRIIVDCSAKHVKVIQDKNIPFDLTLCGSTLRAPHSCHLQYMENMKASASLVMAVVVNDSNEDGDSSDAVQPQKRKRLWGLVVCHHITPKFVPFPLRYACEFLAQVFAIHVNKEIELEYQVIERNILRTQTLLCDMLMRDAPLGIISQSPNIMDLVKCDGAALLYKNNVWRLGVAPSESQIREIALWLSECHKDSTGLSTDSLSDAGFPGAAALGDIICGMASVRISSNDIVFWFRSHTAAEIRWSGAKHEPGDKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDTEIMDISTNAINTRLSDLKIEGMQELEAVTNEMVRLIETATVPIFAVDVDGMVNGWNAKISELTGFPVEEAVGKHLLMLVDDFSTDRVKKMLDMALQGEEEKNVQFEMKTHDLKIDSGPICLVVNACVSRDLQHNVVGVCFVAQDITIQKTSMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNSAMTKLTGWKREKVMNKMLLGEAFGTQMACCRLKNQEAVVNFSIVLNKAVTGLETEKVSFGFFTRNGKYVECLLSMSTKVDIEGVVTGVFCFLQLASPELQQALHIQHLSEQTALKRLKALTYMKRQIRNPLCGILFSQKLLEGTELGTDQKQLLHTGTQCQRQLSKILDDSDLDSIIDGYLDLEMVEFTLQEVLVASLSQVMTKSSAKGIQVVSDVAEEITTETLYGDSLRLQQVLADFLLISINSTPTGGQVVVSASLTKDCLGKLVQLSYLELSITHDGFGVPEALLNQMFGRDGHESEEGISLLISRKLLKHMSGDVRYIRESGKSSFILSVELAMSHKLGA. 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05647 1204 Gene3D - 1037 1202 IPR036890 -
Seca1g05647 1204 SMART pas_2 699 765 IPR000014 -
Seca1g05647 1204 SMART pas_2 829 898 IPR000014 -
Seca1g05647 1204 SMART HKATPase_4 1086 1198 IPR003594 -
Seca1g05647 1204 Gene3D PAS domain 690 827 - -
Seca1g05647 1204 SUPERFAMILY GAF domain-like 489 667 - -
Seca1g05647 1204 SMART gaf_1 298 491 IPR003018 GO:0005515
Seca1g05647 1204 NCBIfam PAS domain S-box protein 704 819 IPR000014 -
Seca1g05647 1204 SUPERFAMILY PYP-like sensor domain (PAS domain) 153 265 IPR035965 -
Seca1g05647 1204 SUPERFAMILY PYP-like sensor domain (PAS domain) 702 810 IPR035965 -
Seca1g05647 1204 Gene3D PAS domain 152 401 - -
Seca1g05647 1204 CDD PAS 841 952 IPR000014 -
Seca1g05647 1204 Pfam GAF domain 298 481 IPR003018 GO:0005515
Seca1g05647 1204 Gene3D PAS domain 843 955 - -
Seca1g05647 1204 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1036 1190 IPR036890 -
Seca1g05647 1204 ProSitePatterns Phytochrome chromophore attachment site signature. 398 407 IPR013516 -
Seca1g05647 1204 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 298 471 IPR016132 -
Seca1g05647 1204 SUPERFAMILY PYP-like sensor domain (PAS domain) 844 950 IPR035965 -
Seca1g05647 1204 ProSiteProfiles PAS repeat profile. 697 767 IPR000014 -
Seca1g05647 1204 PANTHER TWO-COMPONENT HISTIDINE KINASE 977 1187 - -
Seca1g05647 1204 Pfam PAS fold 830 952 IPR013767 GO:0006355
Seca1g05647 1204 Pfam PAS fold 700 814 IPR013767 GO:0006355
Seca1g05647 1204 ProSiteProfiles Histidine kinase domain profile. 981 1200 IPR005467 -
Seca1g05647 1204 Gene3D - 486 659 IPR043150 -
Seca1g05647 1204 Gene3D - 279 642 IPR029016 -
Seca1g05647 1204 SMART HisKA_10 974 1039 IPR003661 GO:0000155|GO:0007165
Seca1g05647 1204 Pfam Phytochrome region 494 668 IPR013515 GO:0006355|GO:0009584
Seca1g05647 1204 CDD PAS 708 814 IPR000014 -
Seca1g05647 1204 SUPERFAMILY GAF domain-like 278 478 - -
Seca1g05647 1204 FunFam Phytochrome 486 617 - -
Seca1g05647 1204 PRINTS Phytochrome signature 511 531 IPR001294 GO:0006355|GO:0009584
Seca1g05647 1204 PRINTS Phytochrome signature 596 615 IPR001294 GO:0006355|GO:0009584
Seca1g05647 1204 PRINTS Phytochrome signature 212 234 IPR001294 GO:0006355|GO:0009584
Seca1g05647 1204 PRINTS Phytochrome signature 792 809 IPR001294 GO:0006355|GO:0009584
Seca1g05647 1204 PRINTS Phytochrome signature 398 419 IPR001294 GO:0006355|GO:0009584
Seca1g05647 1204 PRINTS Phytochrome signature 629 647 IPR001294 GO:0006355|GO:0009584
Seca1g05647 1204 PRINTS Phytochrome signature 313 332 IPR001294 GO:0006355|GO:0009584
Seca1g05647 1204 PRINTS Phytochrome signature 719 734 IPR001294 GO:0006355|GO:0009584
Seca1g05647 1204 PRINTS Phytochrome signature 700 716 IPR001294 GO:0006355|GO:0009584
Seca1g05647 1204 PRINTS Phytochrome signature 812 832 IPR001294 GO:0006355|GO:0009584
Seca1g05647 1204 ProSiteProfiles PAS repeat profile. 830 880 IPR000014 -
Seca1g05647 1204 FunFam Phytochrome 693 824 - -
Seca1g05647 1204 Pfam PAS fold 148 263 IPR013654 GO:0006355
Seca1g05647 1204 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1086 1194 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05647 Seca-Chr1 160055012 160060844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05647 76 1201 Histidine Kinase Gene Family AT1G09570 73.936 0.0 1742
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05647 K12120 - gmx:100791098 1833.54