Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05641 ATGGCTTCTTCTATCACAGTAATAGGTGCTTCTTCCGCATATCAAGCTCCCTCTCTCGAACTATATAAGAAGCCAACCACCACTTCTACTTCCTCCGTTAGGCTCCAATGTTTAGACACCAAGTCCCGCTCTAACTACCTCCTCAGAGCTCACCGTCACCCTAACTTCGATAGGTTTGTTCCTTCCGCCATTGCTACCCCCAATTCTTCTTCCTCTTCCCTCCTAAGTGAAGAAGCTTTCAAAGGGATAGGTCGTGACTTCACTCAAAACGACGACTCTGAAACGGAGGAGCCATCTTCTGCTAACGTGGACGAACTCGACGTTTCCAAGCTCGGTTTGCCTTCTCGCCTCGTCGACTCACTCCAGAACCGCGGGATTACCCATCTTTTCCCCATTCAGAGCGGTGTTAATACCTGCACTAGAAGGAGGTCTGGTCGTCTTCCTAGAGTTTTGGTCCTTGCACCTACCAGGGAGTTAGCAAAGCAGGTGGAGAAGGAGATAAAAGAATCTGCGCCTTATCTAAACACAGTCTGTGTTTATGGGGGTGTTTCTTATGTTACCCAACAAAGTGCACTTACACGTGGCGTTGATGTAGTGGTTGGAACACCTGGTAGAATAATTGATCTAATAAATGGAAACAGCCTTAAGCTGAGTGAAGTTCAGTATTTGGTCCTAGATGAAGCTGATCAGATGCTCGCTGTTGGGTTTGAAGAGGATGTGGAAGTAATTTTAGAAAAACTCCCAGCTGAGAGACAGAGCATGCTTTTCTCTGCAACCATGCCTGGCTGGGTGAAGAAATTGGCTAGAAAATATTTGGACAATCCATTAACCATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGAATAAAACTTTATGCTCTATCAGCCACTGCCACTTCAAAACGGACAATTCTTTCTGATCTTATAACTGTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACTCAGACAAAAAGAGATGCTGATGAAGTATCACTGGCATTAACAAATAGTATAACTTCTGAAGCACTGCACGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTCAGGCAAGGAAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTACGAGCTTCCCAATGATCCTGAGACTTTTGTACATCGCTCTGGCCGTACTGGGCGTGCAGGAAAACAAGGTACTGCTATTTTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTGGGCTGCAAATTTGAATTTGTTAACGCGCCAGCTATGGAAGATGTTTTGGAGTCATCTGCTGAGCAAGTTGTTGCTACACTTAATGGAGTTCATCCTGAGTCTGTTGCATTTTTTACCCCAACTGCTCAAAAACTGATTGATGAACAAGGAACAAGTGCCCTCGCAGCTGCACTAGCACAACTGAGTGGATTCTCCCGACCTCCATCATCCCGGTCTCTCATCACCCATGAACAGGGATGGGTTACATTGCAATTGACTAGAGATTCAGAAAATTCTAGAAGATATTTTTCAGCAAGATCGGTCACTGGGTTTCTTTCTGATGTTCATTCTGCAGCTGCCGATGAAGTGGGAAAAATACATTTAATTGCAGATGAAAGGGTTCAAGGAGCTGTTTTTGATCTTCCAGAGGAGATTGCTAAAGAGGTACTTGATAAGGACATACCACCTGGAAACACTATTTCCAAGATCACTAAGTTACCTCCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTACGGGAAGTTTTCTGATAGAGATAGAAGTAGCCGAAAAGGTTCCACTTCTAGGGATCGAAGAGGTTTTAAAACCTCACGGGGATGGGAAGGGGGCCGAGACTCTGACGATGAGTTTGGTGATTCATTTAGGAGAGGTGGTAGAAATTATAAAACTGGCAACAGCTGGTCTCGAGGAACAAAAAGGAGTGAGGGTGATTGGCTGATAGGAGGCAGACGATCAAGCAGGTCTTCTTCATCAGACAGGTCAGATCTAAGGGAAGGTAACAGCTACAAAAATGGCGAGGAAAGCGAATCTATGAAGCGTCCAGTGTTGTCTTTTGTGAGAAGGTGGAGTTCGAGTTCAAGTTCATGGGCTTTAGCTTTAAGGAAAGCATCTTCTTCTCCTGGGAAAGCCATGCATCTCTACTCTAAAATGCATCGCAAAGGAGTTCCTTTCGATAGCTTCTGCATTCTCTTCACCTTAAAATCATGTACCCATTTGCACAGCTTGGGCATCATTCGACACCTCCATGCCCACATCATCAAACTCGGCTTCGCCTCTCATGTTCACGTGGCATCTTGTCTTCTCAATGCCTACGTTCTCCTCTCTTTCCTTGATGCTTGTCTATTGTTCGACGAAATGCCCCACAAGAACACCGTCACGTGGAACACCATGATTATGGGGTGTTCAAGATCAGGAGATATCCAAAGAGCACGTGAGGTGTTCGAGGAAATGCCCCATAGAGACACCGTGTCATGGTCTTCCATGATTTCTGCTTATACCAATGTTGGAAGTTATGAGCAGGGTTTGTCCCTTTTTCGTCGAATGTTGTTGGGTGAGGGAACAAAACCAGACCAGGTAACTGCTGGTTCGGTTTTACCAGGATGTGCTCACATGGGGTCTCTTGGATTGTTGGCTGGAAAATCAGTTCATGGTTTCATTGTGAAAAATGGGTGGCAGTTGAATGCAGAGTTAGGTGCTTCTCTGGTCATTATGTATGCTAAAGGTGGAGTTTTGAGAAATGCTGCATCGGTTTTTGAGTTGATGTCTGAAAGAGATGTTATGTCTTGGACGGCGTTGATTTGTGGTGCTGCTCAATGGGGCTTCAATGAAGAAGCACTAGCTGTGTTTGAGAAGATGCAGATGGCTGGAGTCAAACCCAATGAACTCACTTTCACTGGGGTGCTCAGTGCTTGTGCTCACGCTGGGTTGGTTGAGGAGGGGCGAAGGTATTTCAAGATGATTGAGGACTATGGCATGGAACCAAGAATTCAACATTATGCATGTTTGGTTTATTTGATTGGGAAAGGTGGGATGCTTGGGGAAGCTTATGAGATTATCAAAACAATGAAAGTGGAGCCAAATGTTGTTGTCTTGGGTTCCTTCTTGTCAGCTTGTAAGGAGCACAGACAATTTGAGATGGCTGAGAGGGTGATTGAGCAGGTACTGAGAATGGCAAAGCCAGAAAATGATAGAGGGATTTATAGCCTAATTTCTGATTTGTATGTTATGGGTGAGAAGTGGGAAGAGGCTGAAAGGTTGAAGAAATTGATGCTTAATGAACATGGGAGAAAGGCCAGGGGGTTTAGCTTTGTCAGAAGTGGATTAAGATAA 3417 0.446 MASSITVIGASSAYQAPSLELYKKPTTTSTSSVRLQCLDTKSRSNYLLRAHRHPNFDRFVPSAIATPNSSSSSLLSEEAFKGIGRDFTQNDDSETEEPSSANVDELDVSKLGLPSRLVDSLQNRGITHLFPIQSGVNTCTRRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQSALTRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEVILEKLPAERQSMLFSATMPGWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLYALSATATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILMYTSSQRRTVRSLERDVGCKFEFVNAPAMEDVLESSAEQVVATLNGVHPESVAFFTPTAQKLIDEQGTSALAAALAQLSGFSRPPSSRSLITHEQGWVTLQLTRDSENSRRYFSARSVTGFLSDVHSAAADEVGKIHLIADERVQGAVFDLPEEIAKEVLDKDIPPGNTISKITKLPPLQDDGPPSDFYGKFSDRDRSSRKGSTSRDRRGFKTSRGWEGGRDSDDEFGDSFRRGGRNYKTGNSWSRGTKRSEGDWLIGGRRSSRSSSSDRSDLREGNSYKNGEESESMKRPVLSFVRRWSSSSSSWALALRKASSSPGKAMHLYSKMHRKGVPFDSFCILFTLKSCTHLHSLGIIRHLHAHIIKLGFASHVHVASCLLNAYVLLSFLDACLLFDEMPHKNTVTWNTMIMGCSRSGDIQRAREVFEEMPHRDTVSWSSMISAYTNVGSYEQGLSLFRRMLLGEGTKPDQVTAGSVLPGCAHMGSLGLLAGKSVHGFIVKNGWQLNAELGASLVIMYAKGGVLRNAASVFELMSERDVMSWTALICGAAQWGFNEEALAVFEKMQMAGVKPNELTFTGVLSACAHAGLVEEGRRYFKMIEDYGMEPRIQHYACLVYLIGKGGMLGEAYEIIKTMKVEPNVVVLGSFLSACKEHRQFEMAERVIEQVLRMAKPENDRGIYSLISDLYVMGEKWEEAERLKKLMLNEHGRKARGFSFVRSGLR. 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05641 1138 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 819 853 IPR002885 -
Seca1g05641 1138 MobiDBLite consensus disorder prediction 607 652 - -
Seca1g05641 1138 FunFam Nucleolar RNA helicase II 300 490 - -
Seca1g05641 1138 Pfam GUCT (NUC152) domain 499 599 IPR012562 GO:0003723|GO:0004386|GO:0005524
Seca1g05641 1138 SMART ultradead3 113 295 IPR014001 -
Seca1g05641 1138 MobiDBLite consensus disorder prediction 684 704 - -
Seca1g05641 1138 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 989 1023 IPR002885 -
Seca1g05641 1138 Pfam PPR repeat 852 878 IPR002885 -
Seca1g05641 1138 Pfam PPR repeat 821 848 IPR002885 -
Seca1g05641 1138 CDD SF2_C_DEAD 304 421 - -
Seca1g05641 1138 Pfam PPR repeat family 954 1001 IPR002885 -
Seca1g05641 1138 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 117 278 IPR014001 -
Seca1g05641 1138 CDD GUCT_Hera 506 586 - -
Seca1g05641 1138 Gene3D - 296 485 IPR027417 -
Seca1g05641 1138 Pfam DEAD/DEAH box helicase 31 267 IPR011545 GO:0003676|GO:0005524
Seca1g05641 1138 Gene3D - 135 282 IPR027417 -
Seca1g05641 1138 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 723 1134 IPR046960 GO:0003723|GO:0009451
Seca1g05641 1138 Gene3D Tetratricopeptide repeat domain 731 879 IPR011990 GO:0005515
Seca1g05641 1138 Gene3D Tetratricopeptide repeat domain 971 1136 IPR011990 GO:0005515
Seca1g05641 1138 NCBIfam pentatricopeptide repeat 821 849 IPR002885 -
Seca1g05641 1138 NCBIfam pentatricopeptide repeat 992 1023 IPR002885 -
Seca1g05641 1138 NCBIfam pentatricopeptide repeat 957 990 IPR002885 -
Seca1g05641 1138 NCBIfam pentatricopeptide repeat 852 886 IPR002885 -
Seca1g05641 1138 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 954 988 IPR002885 -
Seca1g05641 1138 FunFam Pentatricopeptide repeat-containing protein 953 1137 - -
Seca1g05641 1138 MobiDBLite consensus disorder prediction 579 704 - -
Seca1g05641 1138 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 433 IPR027417 -
Seca1g05641 1138 CDD DEADc 117 279 - -
Seca1g05641 1138 Pfam Helicase conserved C-terminal domain 304 412 IPR001650 -
Seca1g05641 1138 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 307 460 IPR001650 -
Seca1g05641 1138 SMART helicmild6 332 412 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05641 Seca-Chr1 160013095 160021459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05641 149 434 Eukaryotic Initiation Factors Gene Family AT1G72730 39.863 4.00e-56 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05641 - - gmx:100789516 1062.37