Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05631 ATGGAAAAGTTCATTTTCAGTGGTCTTATATTGTTAGTAAGGTTACTCACTTCAGAACTCAGATTAGCATCTGCTGGTTGGCTACAGGCACATGCAACTTTCTATGGTGGAAGTGATGCCTCAGCAGGGGGTGCATGTGGCTATGGAAATCTCTATACAGATGGTTATGGCATAAAAACAGCAGCTTTGAGTACAGCTTTGTTTAATGATGGCAAGTCATGTGGTGGTTGCTATGAGATAACTTGTGACGCAAAACAAGTGCCCCAATGGTGCCTTAAGGGCACTTCCATTACTATAACTGCCACAAATTTCTGTCCCCCAAATTTTGCACTCCCTAATGACAATGGTGGTTGGTGTAATCCTCCTAGACCACACTTTGACATGTCTCAACCAGCTTTTGAGACAATAGCCAAATACAGAGCTGGAATTGTGCCAGTTTTATACAGAAAGTATGCTATTATTAATTATTGTTTTGTAATAGTTGAGTGCAAAAGAAGTGGAAACATCAGATTTACCATCAATGGGAGAGACTTTTTTGAACTGGTGCTGATAAGCAATGTAGGTGGTGCTGGAGAGATTTCACGAGTTTGGATCAAAGGGTCCAAAATGAAAAACTGGGAAACCATGTCAAGGAATTGGGGTGCTAACTGGCAGAGCTTAAGCTATCTCAATGGTCAGAGCTTATCTTTCAGAATTCAACTCATCAATGGGAAGACTCTCACAGCTATTAACGTGGCACCATCCAATTGGAGATTTGGCCAGTCTTTCAAAAGTAATGTTCAGTTCTGA 789 0.4106 MEKFIFSGLILLVRLLTSELRLASAGWLQAHATFYGGSDASAGGACGYGNLYTDGYGIKTAALSTALFNDGKSCGGCYEITCDAKQVPQWCLKGTSITITATNFCPPNFALPNDNGGWCNPPRPHFDMSQPAFETIAKYRAGIVPVLYRKYAIINYCFVIVECKRSGNIRFTINGRDFFELVLISNVGGAGEISRVWIKGSKMKNWETMSRNWGANWQSLSYLNGQSLSFRIQLINGKTLTAINVAPSNWRFGQSFKSNVQF. 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05631 262 Gene3D - 165 262 IPR036749 -
Seca1g05631 262 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Seca1g05631 262 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Seca1g05631 262 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Seca1g05631 262 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Seca1g05631 262 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Seca1g05631 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 258 IPR007117 -
Seca1g05631 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 168 IPR007112 -
Seca1g05631 262 SMART dpbb_1 60 148 IPR007112 -
Seca1g05631 262 FunFam Expansin 17 154 - -
Seca1g05631 262 Pfam Expansin C-terminal domain 169 247 IPR007117 -
Seca1g05631 262 SUPERFAMILY Barwin-like endoglucanases 20 186 IPR036908 -
Seca1g05631 262 FunFam Expansin 168 262 - -
Seca1g05631 262 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Seca1g05631 262 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Seca1g05631 262 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Seca1g05631 262 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Seca1g05631 262 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Seca1g05631 262 Pfam Lytic transglycolase 60 148 IPR009009 -
Seca1g05631 262 CDD DPBB_EXPA_N 26 150 - -
Seca1g05631 262 Gene3D - 15 152 IPR036908 -
Seca1g05631 262 SUPERFAMILY PHL pollen allergen 165 258 IPR036749 -
Seca1g05631 262 PANTHER EXPANSIN-A15 17 259 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05631 Seca-Chr1 159929131 159930283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05631 5 262 Expansin Gene Family AT4G01630 72.519 1.04e-139 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05631 - - gmx:100813434 443.351