Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05630 ATGGCGTCTTTGTTCTCAACTCATTTCGTTCAATGTCAGAACCCACTTCCACGCCTTTCTCATCTCCAGGGTAATTTTAGCCAAGATGTGTCTAAGGTTCAAAGGCCACATATGATCTGTAGCGGTACTAGATCACGGCTTGGTCACAGTAAAGCATTGGCATCAACCTCACATTATGCCTTGAGGCTTTCTGCAACGCAACAATCTGAACCAAGACCAATTAGATATAGGAGAATGACATGTGTCAATGCTACAGACAATGAGCCGCAAGCCAAAGTGACTACCAAATGTTTCTTTGATGTAGAAGTTGGGGGTGAACCTGTGGGCAGGATTGTTTTGGGCCTATTTGGAGAGGTTGTACCTAAAACAGTTGAAAATTTCCGTGCTTTGTGCACAGGTAAGCAATCAAACAACATTTTATACATCAAGTTGAATAATCTTTGTGCAGGAGAGAAAGGATATGGTTACAAAGGAAGCTCCTTCCATCGCATCATCAAAGAATTCATGATTCAAGGAGGGGACTTTACTGAGGGAGATGGAACTGGTGGAACTAGTATCTATGGTTCAAAATTTAATGATGAGAGTTTTGCCTTGAAGCATATTGGTCCTGGAGTTTTGAGCATGGCAAATGCTGGTCCTAATACCAATGGTAGTCAATTTTTTATTTGTACTGTAAAGACTCCATGGCTAGACAATCGTCATGTTGTGTTTGGACATGTCATTGATGGAATGGATGTTGTGAGGACACTTGAGTCCCAGGAGACAAGCAGGCTAGACAACCCTCAGAAGCCTTGCAGAATTGTTGATTGCGGAGAATTGCCTGCAGATGGTTGA 834 0.4245 MASLFSTHFVQCQNPLPRLSHLQGNFSQDVSKVQRPHMICSGTRSRLGHSKALASTSHYALRLSATQQSEPRPIRYRRMTCVNATDNEPQAKVTTKCFFDVEVGGEPVGRIVLGLFGEVVPKTVENFRALCTGKQSNNILYIKLNNLCAGEKGYGYKGSSFHRIIKEFMIQGGDFTEGDGTGGTSIYGSKFNDESFALKHIGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRTLESQETSRLDNPQKPCRIVDCGELPADG. 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05630 277 CDD cyclophilin_ABH_like 96 271 - -
Seca1g05630 277 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 156 173 IPR020892 GO:0003755|GO:0006457
Seca1g05630 277 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 99 271 IPR002130 GO:0000413|GO:0003755
Seca1g05630 277 FunFam Peptidyl-prolyl cis-trans isomerase 90 273 - -
Seca1g05630 277 Gene3D - 82 276 IPR029000 -
Seca1g05630 277 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 96 273 - -
Seca1g05630 277 SUPERFAMILY Cyclophilin-like 88 273 IPR029000 -
Seca1g05630 277 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 204 219 IPR002130 GO:0000413|GO:0003755
Seca1g05630 277 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 161 173 IPR002130 GO:0000413|GO:0003755
Seca1g05630 277 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 219 231 IPR002130 GO:0000413|GO:0003755
Seca1g05630 277 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 232 247 IPR002130 GO:0000413|GO:0003755
Seca1g05630 277 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 115 130 IPR002130 GO:0000413|GO:0003755
Seca1g05630 277 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 98 272 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05630 Seca-Chr1 159924381 159927457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05630 28 270 U-box Gene Family AT5G67530 30.855 6.43e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05630 K03768 - gmx:100785805 416.001