Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05628 ATGAGAAACTGGAAAATGAAGCTGCTTCTGATTGCGCTCCTTGCCTTTGTCTCCGTGGTTAGATCTGAAACACATTCTCTCTCTCCGCTGTCTTTCTGGGAAAACGATGTCGTTCCACTGTCAGGGAAGGGTTCCTCCTCCTCGCCCCTACCTCAACCTCTCATGGTTCCACTCACTCTTATTCAAGGAGCTGCTTCTAAAGGAGCTGTCTGTTTGGATGGAACGCTGCCTGGTTACCACTTTCATCCTGGATCTGGATCTGGTGCAAACAGTTGGCTCATTCAATTGGAGGGAGGAGGATGGTGTAACACCATTAGAAGTTGTGTCTTTAGAAAAACTACTCGTCGCGGCTCCTCAAAATACATGGAAAAGCAACTACCATTCACGGGGATATTGAGCAACAAAGCTGAAGAAAACCCTGATTTCTTTAACTGGAACAGAGTCAAAGTACGGTATTGTGATGGGGCATCTTTCAGTGGAGATAGTCAAAATGAGGCTGCACAGCTTCAATTTAGAGGACAAAAAATATGGCTAGCTGCAATGGAGGAATTAATGTCCAAGGGAATGAAGAATGCCAATCAGGCTCTTTTGTCTGGATGCTCTGCTGGCGGTCTGGCATCTATAATACATTGTGATGAGTTTCAGAGCTTGTTTCCAAAATCTACCAAAGTGAAGTGTTTGAGTGATGCAGGGTTTTTTCTTGATGCAACTGATGTATCTGGGGGGCGCACACTGAGAAATCTGTTTGGAGGTGTAGTTAACTTACAGGAAGTGCAAAAAAATCTGCCAAAAAGTTGTCTCAACCAACTGGACCCAACTTCATGCTTCTTCCCTCAAAATTTGATCAACCATATTGAGACTCCATTGTTTCTACTGAATGCAGCTTATGATGCATGGCAGCTCCAAGAAAGTTTAGCCCCACCTTCAGCAGATCCCCATGGCTCTTGGAATGATTGTAAATCAAATCATGCAAATTGTAATTCATCTCAAATTCAGTTCCTCCAAGACTTCAGAAATCAAATGCTAAATGACGTGAAAGACTTCTCAAGGACATCTCAAACTGGATTATTCATAAATTCTTGCTTTGCTCATTGCCAATCTGAGAGACAAGATACATGGTTTGCTGATGACTCTCCGCTTATTAACAATGTGCCAATTGCAATTGCTGTTGGAGACTGGTATTTTGATCGGAAAGGTGTCAAAGCTATTGACTGTGCTTACCCCTGTGACAATACCTGCCATAATCTGGTCTTCAATGTTGGTAGATCTGTCATGGTGGACTCCCAGTCCACAAGTGATGACACTGACACATCAACTACCATGATATATTCCCGCTCCACGAGGTTGACTTTTAGTACTGGCCTATATATGATGAGTGCTTTATTGCCAATTACATGCTACTACTAA 1407 0.43 MRNWKMKLLLIALLAFVSVVRSETHSLSPLSFWENDVVPLSGKGSSSSPLPQPLMVPLTLIQGAASKGAVCLDGTLPGYHFHPGSGSGANSWLIQLEGGGWCNTIRSCVFRKTTRRGSSKYMEKQLPFTGILSNKAEENPDFFNWNRVKVRYCDGASFSGDSQNEAAQLQFRGQKIWLAAMEELMSKGMKNANQALLSGCSAGGLASIIHCDEFQSLFPKSTKVKCLSDAGFFLDATDVSGGRTLRNLFGGVVNLQEVQKNLPKSCLNQLDPTSCFFPQNLINHIETPLFLLNAAYDAWQLQESLAPPSADPHGSWNDCKSNHANCNSSQIQFLQDFRNQMLNDVKDFSRTSQTGLFINSCFAHCQSERQDTWFADDSPLINNVPIAIAVGDWYFDRKGVKAIDCAYPCDNTCHNLVFNVGRSVMVDSQSTSDDTDTSTTMIYSRSTRLTFSTGLYMMSALLPITCYY. 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05628 468 PANTHER NOTUM-RELATED 17 415 IPR004963 GO:0016787
Seca1g05628 468 Pfam Pectinacetylesterase 52 398 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05628 Seca-Chr1 159891318 159897450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05628 55 418 Carbohydrate Esterase AT1G57590 74.725 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05628 K19882 - gmx:100785270 787.334