Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05613 ATGGGAAGGCACTCTTGCTGTTACAAGCAGAAGCTCAGGAAAGGTCTCTGGTCACCTGAGGAAGATGAAAAACTTCTGAGGCATATTACTAAGTACGGTCATGGATGTTGGAGCTCAGTTCCTAAGCAAGCAGGTTTGCAGAGGTGTGGTAAAAGCTGCAGGCTTAGGTGGATCAACTATTTAAGGCCTGATTTAAAGAGAGGTACATTTTCAGAGGAAGAAGAAAATCTTATCATTGAACTTCATGCAGTACTAGGGAATAGATGGTCTCAAATTGCAGCACAATTGCCTGGTAGGACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCTTAAAGAAGAAACTCAGGCAAAGAGGTATAGACCCTGTCACCCATAAACCACTTTCTGAGGTTGAAAATGGAGAGGAGGGCAAAACCATGAGCCAAAAGAAAGCACCAGAAATAACCAATGAATTGAACCTCCTGAAATCAGAGAGCTTCAAGTCAGATGCAGCTTCCTTTGAGCATAGACCATCTTCAATTTCTCCAAAAGCCTATGCAACTGACATGGAAGGTTTTTCCAGCTATAAGATTAACAGCAAAAATGACAGCACCTTGGTAACCAATTGTTCTAGTAAAGACTTGTTCCTTGATAGGTTTATGACATCCCACCAAGATAGCTACTCCACTAGTTGTCAACCTCTAGATTTGATGGGAAATTACCCACTTCAGATGAGTTATGCATCCACTGACACTCTCCCAATCAATTCAAACTCTTGTCATTGGTTCACCCAAATTGGAAAGCCATTTGATATGAACTCTGAATATACTTCTAACATTATGTCTATTCTTCCACCAACTAGCTCACTTCTCCCTAGTTCTTATTGCTACAAGCCAGCACTAGATGTCCCCTCAGAAGATATCTCTACAACCTCTTTTGCTGTGAATGGATCCAATTACTGGGAAGCCAGTGTCTCCAACAATAGTGATAACAGCAACACGAGTAATAGCAGTAGAGAGTTGTCAAGTAACACCCCCTTAAACATAAAGAACAATCTACTTTCTTCTTGGGGATTGACAGATTGTGGAACCTCTACTAAAGAGGCTCAAATTCAAATTCATCTGACAGATAACCACACTGAAGAAGCTAAGTGGTCTGAGTACCTTCACAACCCAATGTTAATGCTGGCAGCTGTACAAAATCAAGCACATGAATCTTTATGCAACCAGATAAAGCCGGCCACTCATTTGGTACCAGATGCTTTAGGGGCTATATTGCCGCATTCCAAACAACAAGAACCTTCTCAAACTTCTAGTATCTTTTCCAAGGACATTCAGAAGCTAACAGCAGCATTTGAACACATATAG 1350 0.4096 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSEEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGEEGKTMSQKKAPEITNELNLLKSESFKSDAASFEHRPSSISPKAYATDMEGFSSYKINSKNDSTLVTNCSSKDLFLDRFMTSHQDSYSTSCQPLDLMGNYPLQMSYASTDTLPINSNSCHWFTQIGKPFDMNSEYTSNIMSILPPTSSLLPSSYCYKPALDVPSEDISTTSFAVNGSNYWEASVSNNSDNSNTSNSSRELSSNTPLNIKNNLLSSWGLTDCGTSTKEAQIQIHLTDNHTEEAKWSEYLHNPMLMLAAVQNQAHESLCNQIKPATHLVPDALGAILPHSKQQEPSQTSSIFSKDIQKLTAAFEHI. 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05613 449 FunFam MYB transcription factor 68 140 - -
Seca1g05613 449 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca1g05613 449 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca1g05613 449 Gene3D - 69 146 - -
Seca1g05613 449 Gene3D - 11 67 - -
Seca1g05613 449 MobiDBLite consensus disorder prediction 320 339 - -
Seca1g05613 449 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca1g05613 449 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca1g05613 449 CDD SANT 17 61 IPR001005 -
Seca1g05613 449 FunFam Myb transcription factor 11 67 - -
Seca1g05613 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca1g05613 449 SMART sant 66 114 IPR001005 -
Seca1g05613 449 SMART sant 13 63 IPR001005 -
Seca1g05613 449 PANTHER MYB DOMAIN PROTEIN 55 1 355 - -
Seca1g05613 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca1g05613 449 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05613 Seca-Chr1 159787073 159788687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05613 1 446 MYB Transcription Factor Family AT1G09540 40.440 4.31e-94 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca1g05613 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05613 K09422 - gmx:100815881 608.986