Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05608 ATGAGTGAGAAGATGCTTGACTCTAGCCACTCAGGAATGACAAGAAACTCCTCTCATCTAGCTTCCATTTATGGCAAGGATTTAGTTGAGTTGGTATGGGAAAATGGTCAGATTCTTGTACAAGGAGGTTCATCAAATGGAACAGGAAAGGCTCCTATGTGCATAGGGTATTCAATAAACCCTTCACATAACATGGAAGCAATAGGTGAAGATGCCAGCATTACAAAAAAAACAAGCTTAAGCACATCATCATATTCACTTTTGAATCACTTCCCACCTCAAAAAAACTCTGACTTGACCTCTTCTCATCAAAGCAATGGCCAAGGTTCCTGTCAGATTGATTTGCAATCCTCCCAAAGCAAGAATTCCTTCAAGTCTAATGAAGAATTCACAAACTTGAGACCAATAAAAAACTCTAACCTCACTGAGGGACCTCATCATCAGCTCAATACTACAACAGCAAATAGCCACTTGTGCAAATATCCCTCACAACAGTCCTTACCAAGAATGGACTCAAACCAAACACCAACAACAAACTCAAAGAAACAGTACTTTGGATGTGATCAAAGATCAAGAAAGGTGAACTTCTCCAACTTTTTGATACCTACAATGCTTCTCAGATCAACATATCAGGGAAACAGTGCAACTAGGCCAACAAGAAATCCATCTTCAGCAAGAGTGGAGGAGATTGAACCAAAAGCAGCAAATATTGCTTCAACTAGTGGCAAAGCTCCTGATTCAGCTAAAGGATCAACTGGTCTCACCACAGGATCTCAAGAAAGAACATCATTAATAACTGCTAATAAATCCAACCTGGCATCCCTTGCTGAAAGAAGTGCTGAACCACCCCTTGACCAACACTCTGAAGCTATTGGCCATAGCATTAATGCCCTTGGAACTCAAGGATCACATGGTCAATATTATAACCAAACCTCAAACTCAGCAGCAGTTAGAGCAAAAGGAAAAGCTAATGCTAACTTGTGTAATGAAAGAGTGTCTTCTTCTGTATGCTCACTTGGAGCCTCAAATGACCCAAATTTTGGTATCAGAAAACATGAGGACACTGATGACTCAACATATTTTAGTGATAATGATGAAGAAGCAGAAGATATAGTAAAGGAAATGCCTGCTAGGGAGGGTAACAGAGTTAAGAGAAGCAGGAATGCAGAGATTCATAACTTATCTGAAAGGAAGCGAAGAGATAAAATCAACAAGAAGATGCGCACATTAAAAGAGCTCATACCAAATTGCAATAAGGTGGACAAAGCATCAATGCTTGATGATGCCATCGACTATCTAAAGACCCTCAAGCTTCAGTTACAGGTAAAGTTTGTTAATAACATATTTGGTTTAACGTTGAAAACGTGTTTATAG 1374 0.3945 MSEKMLDSSHSGMTRNSSHLASIYGKDLVELVWENGQILVQGGSSNGTGKAPMCIGYSINPSHNMEAIGEDASITKKTSLSTSSYSLLNHFPPQKNSDLTSSHQSNGQGSCQIDLQSSQSKNSFKSNEEFTNLRPIKNSNLTEGPHHQLNTTTANSHLCKYPSQQSLPRMDSNQTPTTNSKKQYFGCDQRSRKVNFSNFLIPTMLLRSTYQGNSATRPTRNPSSARVEEIEPKAANIASTSGKAPDSAKGSTGLTTGSQERTSLITANKSNLASLAERSAEPPLDQHSEAIGHSINALGTQGSHGQYYNQTSNSAAVRAKGKANANLCNERVSSSVCSLGASNDPNFGIRKHEDTDDSTYFSDNDEEAEDIVKEMPAREGNRVKRSRNAEIHNLSERKRRDKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQVKFVNNIFGLTLKTCL. 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05608 457 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 386 442 IPR036638 GO:0046983
Seca1g05608 457 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 387 436 IPR011598 GO:0046983
Seca1g05608 457 SMART finulus 393 442 IPR011598 GO:0046983
Seca1g05608 457 MobiDBLite consensus disorder prediction 235 263 - -
Seca1g05608 457 Gene3D - 383 444 IPR036638 GO:0046983
Seca1g05608 457 Pfam Helix-loop-helix DNA-binding domain 392 436 IPR011598 GO:0046983
Seca1g05608 457 MobiDBLite consensus disorder prediction 240 263 - -
Seca1g05608 457 MobiDBLite consensus disorder prediction 85 183 - -
Seca1g05608 457 FunFam Basic helix-loop-helix transcription factor 382 445 - -
Seca1g05608 457 CDD bHLH_AtPIF_like 387 442 IPR047265 -
Seca1g05608 457 PANTHER TRANSCRIPTION FACTOR PIF3 2 442 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05608 Seca-Chr1 159743588 159746820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05608 297 442 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 46.012 3.56e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g05608 HLH 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05608 K12126 - gmx:100784724 380.178