Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05604 ATGGAAGCAAATGGGGGGATCTTGATGCGGGGACAAAAATTTGTGGACCCTGGTGCAGCAGGACCATGCAACAAACTAGACGTCGTCAATGATGCATCGGTTTCTAATGATAAGACAGAACGAGAGGCATCGGTTTCTCCCTCAAACAATGGGGAGGTAATGTCAAAGAAACGCGACCATCCTTTGACTAAAGGAAAACAAGCTGCTACACCAGAAGATGTGTCCTCACACTCACACTCACAGAGTTGGGGCTCATCCAAAACCCCTAAGCTAGAACAAGAATCCAAAACTGTTGAACAAGTTAGCGGTGGTGACGGCGGTGAGGTTCCTTTCAGAAAAGCCAGGGTTTCCGTACGTGCAAGATCAGAAGCTCCCATGATTAGCGATGGATGTCAGTGGAGGAAATATGGGCAAAAAATGGCCAAGGGAAATCCTTGTCCTCGTGCTTACTATCGTTGCACTATGGCTGTAGGATGCCCAGTTCGCAAGCAGGTGCAACGATGTGCAGAGGACAGAACGGTTTTAATAACAACTTATGAAGGGAATCATAACCACCCTCTTCCACCAGCTGCAACTGCCATGGCAAATACCACATCAGCAGCAGCGGCAATGCTCCTATCAGGTTCCGCCACGTCAAAGGAAGCGCTAACAACCTCTGCAGGATCGTATCTCTCTTCAATTCCCTATGCTTCAATGGCAACCCTTTCAGCTTCTGCACCATTCCCAACTATTACCCTTGATTTGACACAGACTGGGCCCAATGCTATGATGAATCTTCACCGAGGACCTTTCCCTCTCCCTCTACCATTACATGCTGCAGCTAATCAGGTGCCTCAACTGTTAGGGCACCCGTTGTTTTTCCCCCAGCAGAGGGTAGCACCTGCTGCGGCTTTGCCCTTACTTCAACGACCGCATTCGGCTATGGTGGAGACAGTGAGTGCAGCAATTGCTACCGATCCAAACTTTACAGCAGCTTTGGCGGCGGCTATCTCGTCAATCATTGGGGCACCGAGAGGAAGCAGTGATGGAAGTGCTATTCCTGGTTCACCACAGCTTCCTCAGTCATGCACTACATTCTCTACCAACTAG 1089 0.4949 MEANGGILMRGQKFVDPGAAGPCNKLDVVNDASVSNDKTEREASVSPSNNGEVMSKKRDHPLTKGKQAATPEDVSSHSHSQSWGSSKTPKLEQESKTVEQVSGGDGGEVPFRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTVLITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSATSKEALTTSAGSYLSSIPYASMATLSASAPFPTITLDLTQTGPNAMMNLHRGPFPLPLPLHAAANQVPQLLGHPLFFPQQRVAPAAALPLLQRPHSAMVETVSAAIATDPNFTAALAAAISSIIGAPRGSSDGSAIPGSPQLPQSCTTFSTN. 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05604 362 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 36 338 IPR044810 GO:0003700
Seca1g05604 362 MobiDBLite consensus disorder prediction 69 100 - -
Seca1g05604 362 FunFam probable WRKY transcription factor 31 112 189 - -
Seca1g05604 362 SUPERFAMILY WRKY DNA-binding domain 120 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g05604 362 MobiDBLite consensus disorder prediction 344 362 - -
Seca1g05604 362 MobiDBLite consensus disorder prediction 29 52 - -
Seca1g05604 362 Pfam WRKY DNA -binding domain 129 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g05604 362 Gene3D WRKY domain 112 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g05604 362 ProSiteProfiles WRKY domain profile. 122 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g05604 362 MobiDBLite consensus disorder prediction 1 110 - -
Seca1g05604 362 MobiDBLite consensus disorder prediction 339 362 - -
Seca1g05604 362 SMART WRKY_cls 127 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05604 Seca-Chr1 159680609 159681998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05604 46 334 WRKY Transcription Factor Family AT4G04450 51.667 9.71e-83 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca1g05604 WRKY 3.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05604 - - gmx:100817839 449.899