Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05599 ATGAGGCCTGAGAATGGCGAAGCGCATAAACATGATGAAACAACTACCAACACAGAAGGGGAAAAGAGCAAACAAAAAGAGAAAGTTGAAACGGTTCCATATTACAGGTTGTTCTCATTTGCAGACTCTGCTGACATCCTGTTGATGATTTTAGGCACCATTGGTGCCATTGGAAATGGTTTGGGTATGCCTATCATGGCGTTGCTGTTTGGACAAATGATTGATAGCTTTGGAAATAACCAGCTTGGCCCAGACGTTGTCAACCAAGTTTCCAAGGTCTCTTTAAAATTTGTATACTTGGGAATAGGCACTGGTGTGGCTTCATTCCTCCAGGTGGCTTGCTGGATGGTCACAGGGGAGAGACAAGCTGCAAGAATTAGGGCCTTGTATTTGAAAACTATACTGAGACAAGAGATTGCTTTCTTCGATAAGGAAACTAACACTGGAGAGGTGATAGGGAGAATGTCAGGTGACACTGTGCTCATACAAGATGCCATGGGGGAGAAGGTTGGGAAATTTTTGCAGTTAGTAGCTACATTCATTGGAGGCTATGTGATAGCATTTATCAAAGGGTGGCTTCTTACTGTTGTCTTGTTGTCCACTCTTCCACTTCTTGTTGCTGCTGGTGCTGCTATGGCTCTTATCATAGGAAAGATGGCATCCCGAGGGCAAAGCGCATATGCAAAAGCTTCACATGTAGTAGAACAGACAATTGGCTCAATAAGAACTGTTCAGTCCTTTACTGGGGAAAAGCAAGCAGTATCTAGTTACAGAAAATTTCTTGCAGATGCTTACAAATCAGGAGTTCATGAAGGTTTGGTATCCGGAATGGGTTTTGGCATGGTTATGTTAGTTATTTTCTGTGGTTATGCTTTGGCTGTATGGTTTGGAGCTAAGATGATAATAGAAAAAGGATATGATGGGGGTGAAGTGACCAATGTCATTATTGCTGTGTTGAATGCTTCAATGTCTCTTGGCCAGACATCTCCTTCCATGAGTGCTTTTGCTGCGGGTCAAGCAGCAGCTTATAAAATGTTTCAGACAATTGAGAGAAAGCCAGAGATAGATGCCTATGACCCAAATGGAAAAGTACTAGAGGATATTCATGGTGAAATAGAATTAAGGGATGTTCATTTCAGTTATCCAGCCAGGCCTGAGGAGTTGATATTCAATGGATTCTCTCTTCACATACCAAGTGGCACCACTGCTGCTTTGGTAGGAGAAAGTGGAAGTGGCAAGTCTACAGTTATCAGTTTGATAGAAAGATTCTATGATCCACAAGCAGGTGAAGTTCTTATTGATAGCATTAATGTGAAAGAGTTTCAGCTTAGATGGATCAGAGGAAAAATTGGCCTTGTAAGCCAGGAGCCAGCATTGTTTGCATCTAGTATTAAGGATAATATTGCATATGGAAAGGAGGGAGCAACAATTGAAGAGATAAGAACTGCCGCTGAACTTGCAAATGCTGCTAAGTTTATTGATAAACTGCCACAGGGATTTGACACAATGGTTGGTGAGCATGGAACTCAACTATCTGGTGGACAGAAGCAGCGCATTGCCATTGCAAGAGCAATCCTGAAAGATCCAAGAATTCTACTTCTAGATGAAGCTACAAGTGCACTTGATGCAGAGTCTGAAAGTATAGTGCAAGAAGCTCTAGACAGGGTCATGGTCAACAGAACTACTATTGTTGTTACACATCGCCTGAGCACAGTGAGGAATGCTGACATGATTGCTGTAATTCATAGAGGGAAAATGGTTGAGAAAGGTACGAAACAAATGTATTGGCTTCTTTTTTTGAGAACACACGTAGAATTACTCAAGTATCCTGAGGGAGCTTACTCTCAACTTATACGTTTACAAGAAGTAAACAAGGAATCAGAAGAAACTGCAGACAAACAAAACAAGAGTGAACTTTCCTCAGAATCATTTAGACGATTGAGTCAAAGGGGGTCACTCTCACTTCGAAGATCAGGATCATCTGTGGGGAATAGTAGCCGCCACTCATTTTCAGTTTCATTTGGTTTACCCACAGGAGTTAACATCCCTGATACTGAACATGAAAATTCACAACCTGAAGAAAAATCACCAGAGGTTCCACTCCGACGCCTTGCTTCCCTTAACAAGCCAGAGATTCCAGTGCTTCTGATTGGATGTATAGCTGCCATAGCAAATGGTACTATATTTCCAATATTTGGCGTTTTGCTTTCCAGTGTTATCAAAACATTTTATGAACCATTCCATGAGATGAGCAAGGATTCCAAGTTTTGGTCACTAATGTTTGTGACTCTTGGAATTGCATCTTTAGTGGCAATTCCAGCTCGAGGATACTTTTTCTCTGTGGCTGGCAGTAAGTTAATACAACGTATTAGGTTGATTTGTTTTGAGAAGGTGATCAACATGGAAGTTGGTTGGTTTGATGAGCCTCAGCACTCAAGTGGTGCAATTGGTGCAAGGCTCTCAGCAGATGCTGCATCTGTGCGTGCCCTTGTTGGTGATGCGCTGGGACTTTTGATTCAGAATATAGCAACAGCATTGACAGGTTTGATCATTGCTTTCATTGCAAGCTGGCAGTTGGCGTTTATTCTTCTTGTCTTGGTTCCCCTCATTGGAATGAATGCATATATTCAAATGAAATTCATGAAAGGATTCGGTGAAGATGCAAAGAAGATGTATGAGGGAGCAAGCCAAGTTGCTAATGATGCAGTGGGAAGCATAAGAACGGTGGCTTCTTTCTGTGCAGAAGAGAAAGTTATGGACTTGTACAGGAAGAAATGTGAAGGTCCTGTGAAAACAGGGATACGGCAAGGCTTGATCAGTGGAACAGGATATGGGATTTCATTTTTCTTGCTCTTTAGTGTGTATGCAACCAATTTCTATGCTGGAGCAAGATTTGTGGACGCTCACAAGGCAACATTCTCAGATGTTTTCCGGGTTTTCTTTGCTTTAACAATGGCAGCTATTGGAATTTCCAACTCAAGCTCTCTAGCTCCTGATTCTAGCAAAGCCAAGACTGCCACTGCTTCCATCTTTGAAATAATTGATAGGAAGTCAAAGATAGATCCGAGTGATGAATCTGGCAGCACACTGGATAGCACAAAGGGAGAAATAGAGCTTCGTCATGTGAGCTTTAAGTATCCATCTAGGCCACATATACAAATTTTTCGAGACCTTAGCTTGACTATCCATTCTGGCAAGACTGTGGCCCTTGTTGGTGAAAGTGGAAGCGGGAAATCCACAGTAATTGCTTTGTTACAAAGATTTTATGACCCTGATTCTGGACAAATTACACTCGATGGCATAGAAATTCAGAGTTTACAGCTTAAGTGGTTAAGGCAACAAACAGGCCTTGTAAGCCAAGAACCAGTTTTGTTCAATGACACTATCCGTGCAAATATTGCCTATGGAAAGGATGGCAAAGCAACTGAAGCAGAAATCATAAATGCAGCAGAATTGGCCAATGCCCATAGGTTTATTAGTGGCTTACAACAGGGTTATGATACAGTGGTGGGAGAAAGGGGGATCCAACTATCTGGTGGGCAGAAACAACGTGTAGCCATTGCACGTGCTATAATTAAAAGTCCAAAGATATTGCTACTAGATGAGGCCACAAGTGCATTAGATGCAGAGTCAGAGAGAGTTGTTCAAGATGCATTAGACAAAGTGATGGTGAACCGGACCACTGTGGTTGTGGCACATCGTCTATCTACAATTAAAAATGCAGATGTGATTGCAGTGCTTAAAAACGGAGTTATAGTGGAGAAAGGAAGGCACGAGACACTCATTAACATTAAGGATGGATTTTATGCTTCCTTAGTCCAACTTCATGCAAGTGCTACAACAGTGTGA 3849 0.4193 MRPENGEAHKHDETTTNTEGEKSKQKEKVETVPYYRLFSFADSADILLMILGTIGAIGNGLGMPIMALLFGQMIDSFGNNQLGPDVVNQVSKVSLKFVYLGIGTGVASFLQVACWMVTGERQAARIRALYLKTILRQEIAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGKFLQLVATFIGGYVIAFIKGWLLTVVLLSTLPLLVAAGAAMALIIGKMASRGQSAYAKASHVVEQTIGSIRTVQSFTGEKQAVSSYRKFLADAYKSGVHEGLVSGMGFGMVMLVIFCGYALAVWFGAKMIIEKGYDGGEVTNVIIAVLNASMSLGQTSPSMSAFAAGQAAAYKMFQTIERKPEIDAYDPNGKVLEDIHGEIELRDVHFSYPARPEELIFNGFSLHIPSGTTAALVGESGSGKSTVISLIERFYDPQAGEVLIDSINVKEFQLRWIRGKIGLVSQEPALFASSIKDNIAYGKEGATIEEIRTAAELANAAKFIDKLPQGFDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESESIVQEALDRVMVNRTTIVVTHRLSTVRNADMIAVIHRGKMVEKGTKQMYWLLFLRTHVELLKYPEGAYSQLIRLQEVNKESEETADKQNKSELSSESFRRLSQRGSLSLRRSGSSVGNSSRHSFSVSFGLPTGVNIPDTEHENSQPEEKSPEVPLRRLASLNKPEIPVLLIGCIAAIANGTIFPIFGVLLSSVIKTFYEPFHEMSKDSKFWSLMFVTLGIASLVAIPARGYFFSVAGSKLIQRIRLICFEKVINMEVGWFDEPQHSSGAIGARLSADAASVRALVGDALGLLIQNIATALTGLIIAFIASWQLAFILLVLVPLIGMNAYIQMKFMKGFGEDAKKMYEGASQVANDAVGSIRTVASFCAEEKVMDLYRKKCEGPVKTGIRQGLISGTGYGISFFLLFSVYATNFYAGARFVDAHKATFSDVFRVFFALTMAAIGISNSSSLAPDSSKAKTATASIFEIIDRKSKIDPSDESGSTLDSTKGEIELRHVSFKYPSRPHIQIFRDLSLTIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGQITLDGIEIQSLQLKWLRQQTGLVSQEPVLFNDTIRANIAYGKDGKATEAEIINAAELANAHRFISGLQQGYDTVVGERGIQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVLKNGVIVEKGRHETLINIKDGFYASLVQLHASATTV. 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05599 1282 Pfam ABC transporter 1056 1205 IPR003439 GO:0005524
Seca1g05599 1282 FunFam ABC transporter B family member 1 362 622 - -
Seca1g05599 1282 CDD ABC_MTABC3_MDL1_MDL2 1037 1275 - -
Seca1g05599 1282 FunFam ABC transporter B family member 9 1004 1026 - -
Seca1g05599 1282 Pfam ABC transporter 391 539 IPR003439 GO:0005524
Seca1g05599 1282 Coils Coil 617 637 - -
Seca1g05599 1282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1037 1274 IPR003439 GO:0005524
Seca1g05599 1282 Pfam ABC transporter transmembrane region 49 323 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g05599 1282 Pfam ABC transporter transmembrane region 715 987 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g05599 1282 CDD ABC_6TM_Pgp_ABCB1_D2_like 705 1020 - -
Seca1g05599 1282 FunFam ABC transporter B family member 1 695 1003 - -
Seca1g05599 1282 SUPERFAMILY ABC transporter transmembrane region 36 356 IPR036640 GO:0005524|GO:0016020
Seca1g05599 1282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 372 608 IPR003439 GO:0005524
Seca1g05599 1282 ProSitePatterns ABC transporters family signature. 511 525 IPR017871 GO:0005524|GO:0016887
Seca1g05599 1282 SMART AAA_5 1064 1257 IPR003593 GO:0016887
Seca1g05599 1282 SMART AAA_5 399 585 IPR003593 GO:0016887
Seca1g05599 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 593 IPR027417 -
Seca1g05599 1282 Gene3D ABC transporter type 1, transmembrane domain 95 1011 IPR036640 GO:0005524|GO:0016020
Seca1g05599 1282 PANTHER ABC TRANSPORTER B FAMILY 11 623 IPR039421 -
Seca1g05599 1282 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 716 1002 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g05599 1282 CDD ABC_6TM_Pgp_ABCB1_D1_like 49 333 - -
Seca1g05599 1282 Gene3D - 1027 1281 IPR027417 -
Seca1g05599 1282 MobiDBLite consensus disorder prediction 625 640 - -
Seca1g05599 1282 MobiDBLite consensus disorder prediction 625 699 - -
Seca1g05599 1282 SUPERFAMILY ABC transporter transmembrane region 697 1021 IPR036640 GO:0005524|GO:0016020
Seca1g05599 1282 ProSitePatterns ABC transporters family signature. 1177 1191 IPR017871 GO:0005524|GO:0016887
Seca1g05599 1282 CDD ABC_MTABC3_MDL1_MDL2 372 621 - -
Seca1g05599 1282 Gene3D - 370 638 IPR027417 -
Seca1g05599 1282 MobiDBLite consensus disorder prediction 641 686 - -
Seca1g05599 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1029 1275 IPR027417 -
Seca1g05599 1282 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 337 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g05599 1282 FunFam ABC transporter B family member 1 1027 1277 - -
Seca1g05599 1282 FunFam ABC transporter B family member 9 36 368 - -
Seca1g05599 1282 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05599 Seca-Chr1 159635723 159641100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05599 17 621 Calmodulin-binding Proteins AT2G36910 37.255 2.34e-113 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05599 K05658 - gmx:100802547 2069.66