Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05598 ATGGCAATGTCTGTGATGAGAACAAAACAAGGCCTGGTTAAACCAGCCAAGGATACTCCATCTACCACACTAGACCTATCAGTCATTGATAGATTACCTGTTCTAAGATGCAATGCTAGAACCTTACACGTATTCAAACATGGCCCTGAAGCTACAAGTGTCATAAAAGAAGCCTTGTCTCAAGCACTGGTTCCCTATTACCCTCTTGCAGGACGCCTCAAAGAATCCAAACCAGGGTGTCTCCAAATTGAATGCTCAGGTGATGGTGTGTGGTATGTTGAGGCATCATCTGATTGCACCCTTGACTCTGTCAATTTCTTTGATGATGTTGAGTCTATTCCATATGATCATCTTCTTCCTGATAATATTCCTGAGACAGAACACATAGACCCCCTTGTGCAAATGCAGGTAACACAATTTGGTTGTGGGGGTTTTGTGATAGGCCTCATATTCTGTCATAGCATATGTGATGGTCTTGGTGCTGCACAATTTCTAAATGCTATTGGGGAGGTAGCTAGAGGTCTTGAGAAACCCAGCATTGAACCAGTGTGGAACAGAGACTTCTTTCCATCTCCTCAGACACCACAAGAAGAAGCTGCTGCATTGTCAAAACTACCTCCTAGAGGTCCACCTCCAATGCCAGATTACCAGCTTCACCATGCTCACATAGACATGCCCATAGACCAAATCAACCGGCTGAAGAGAGAATTTCAACAAGTGACTGGACACAATTGTTCTGCTTTCGAGGTTGTAGCTGCAGGGTTTTGGAGCAGCAGAACAAAAGCCATTAATTTTGAGCCTAATACTCAATTGAAGCTTGTGTTCTTTGCAAATTGCCGTCAGTTATTGGACCCTCCTCTACCCAATGGTTTCTATGGTAATTGTTTCTTCCCAGTGACAATTACAGCTTCATGTGAGACACTTAGAAAGGCACAGATAGTTGATGTGGTGAAGCTGATCCAAGAAGCAAAGGCTAAGTTACCTATTGAGTTTGGAAAGTACTTGAAGGGAGAGCATTTGAAAGGTGATGGTGAGGACCCTTTTGCACCTCCACTTGCATATACCACATTGTTCATATCTGAGTGGGGAAGGCTGGGATTCAACCACGTGGACTACCAGTGGGGTCCACCAGTCCACGTGGTCCCTATTCAAGGGTCCAGTATTATACCAGTGGGTATTGTGGGGTCCATGCCTCTTCCAAATAAAGGGATTCGTTTGTTGACATGGTGTGTGGAGGAGACTCATCGACTTCCTTTCCTTAATCACATGCATGGTGTCATGGATCAGCAATTGTTGTTATAA 1302 0.4432 MAMSVMRTKQGLVKPAKDTPSTTLDLSVIDRLPVLRCNARTLHVFKHGPEATSVIKEALSQALVPYYPLAGRLKESKPGCLQIECSGDGVWYVEASSDCTLDSVNFFDDVESIPYDHLLPDNIPETEHIDPLVQMQVTQFGCGGFVIGLIFCHSICDGLGAAQFLNAIGEVARGLEKPSIEPVWNRDFFPSPQTPQEEAAALSKLPPRGPPPMPDYQLHHAHIDMPIDQINRLKREFQQVTGHNCSAFEVVAAGFWSSRTKAINFEPNTQLKLVFFANCRQLLDPPLPNGFYGNCFFPVTITASCETLRKAQIVDVVKLIQEAKAKLPIEFGKYLKGEHLKGDGEDPFAPPLAYTTLFISEWGRLGFNHVDYQWGPPVHVVPIQGSSIIPVGIVGSMPLPNKGIRLLTWCVEETHRLPFLNHMHGVMDQQLLL. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05598 433 SUPERFAMILY CoA-dependent acyltransferases 237 373 - -
Seca1g05598 433 Pfam Transferase family 4 383 - -
Seca1g05598 433 Gene3D - 206 419 IPR023213 -
Seca1g05598 433 Gene3D - 1 202 IPR023213 -
Seca1g05598 433 PANTHER ACYL TRANSFERASE 4 3 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05598 Seca-Chr1 159628616 159630765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05598 3 389 Monolignol Biosynthesis Gene Families AT5G48930 28.155 2.85e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05598 - - gmx:100783128 727.628