Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05597 ATGTTCCTTTTCCTTCTTTTGTTTTCTGCCATGGAAGATGAACCTTTTCTGGGACTCGAGCGTTGCGATTTACCCTTCACCTCTTCCAAGTCCTTCAACGATGTTGTCACTTTACAAGAAGCCCCACGACCACAAGTTTCAGAGATAGAATCCTTCACTGAACCCCACCGGAACCCACCATTGCCTCCGAAGAAGAAACTCAGTCGCTGCAAAACCGCTCCTGCTATGGTTACCATGCGAGACCTCAAACCAAAGGTACCCCAAGTTCCCAAACCTCAATCTAGTTCCATCATCAGACAAGGCATTTGGTTGCTTCTCATATATCTCTCTGTGGGTGTCTTCATATACTCTTTCAACAGGGACCGTTTTTCTGGCATAGAGACTCACCCTGTTGTTGATGCCCTTTACTTTTGTATAGTTACCATGTGTACTATAGGTTATGGGGATATAGCTCCTTTAACCCCAATTACAAAGGTCTTTGCTTGTGTTTTTGTCTTGGTGGGGTTTGGATTTATAGATATACTCCTTAGTGGGCTTGTCAATTTTGTCTTAGATTTGCAGGAGAATTTGATCCTAACGGGTCTTCAAGTGGGTTCTAGAGAAGGTTTCTCTGCAAGGGATTATATAGTTGATGTGGCTAAGGGTAGGATGAGGATTAGATTGAAGGTTGGTTTGGCACTTGGGGTTGTGGTGCTTTGTATTGGGATTGGGAGTTTGGTGTTGTACTTTGTGGAGGGTTTGGATTGGGTTGATTCCATTTATTTATCAGTTATGTCTGTCACAACTGTTGGGTATGGGGATAGAGCCTTCAAGACCCTTCCGGGTAGGTTATTTGCAGCTATTTGGCTTCTGTTTTCTACATTGATGGTGGCAAGGGCCTTCCTGTATCTGGCAGAGGCAAGAATTGATAGGAGGCATAGGAGAATGGCCAAGAAAGTGTTGCAAAGAGAAATAACTGTGGAGGATTTGATTGCTGCTGATATCAACCACACTGGTTTTATCAGTAAATCAGAGTATGTGATCTTCAAGCTGAAAGAGATGGGTAAGATACGGGACAAGGATGTATTGCAAATATGTGATCAATTCATGAAACTTGACCCTTCAAACTGCGGGAAGATAACATTACCTCATCTTTTGGAGGGTAGGTCATGA 1152 0.4323 MFLFLLLFSAMEDEPFLGLERCDLPFTSSKSFNDVVTLQEAPRPQVSEIESFTEPHRNPPLPPKKKLSRCKTAPAMVTMRDLKPKVPQVPKPQSSSIIRQGIWLLLIYLSVGVFIYSFNRDRFSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPITKVFACVFVLVGFGFIDILLSGLVNFVLDLQENLILTGLQVGSREGFSARDYIVDVAKGRMRIRLKVGLALGVVVLCIGIGSLVLYFVEGLDWVDSIYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLFSTLMVARAFLYLAEARIDRRHRRMAKKVLQREITVEDLIAADINHTGFISKSEYVIFKLKEMGKIRDKDVLQICDQFMKLDPSNCGKITLPHLLEGRS. 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05597 383 FunFam Two-pore potassium channel 5 86 196 - -
Seca1g05597 383 Pfam Ion channel 231 299 IPR013099 -
Seca1g05597 383 Pfam Ion channel 104 183 IPR013099 -
Seca1g05597 383 SUPERFAMILY Voltage-gated potassium channels 94 183 - -
Seca1g05597 383 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 132 356 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca1g05597 383 SUPERFAMILY Voltage-gated potassium channels 213 320 - -
Seca1g05597 383 Gene3D - 76 191 - -
Seca1g05597 383 Gene3D - 208 326 - -
Seca1g05597 383 ProSitePatterns EF-hand calcium-binding domain. 327 339 IPR018247 -
Seca1g05597 383 FunFam Two-pore potassium channel 3 206 320 - -
Seca1g05597 383 PRINTS Two pore domain K+ channel signature 261 270 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca1g05597 383 PRINTS Two pore domain K+ channel signature 140 168 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05597 Seca-Chr1 159620100 159622487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05597 58 379 Ion Channels AT4G01840 69.697 3.67e-160 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05597 K05389 - gmx:100780438 592.038