Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05593 ATGTCTGGAAAAATAATTATCTCTGCTGTTTCTCTCATCCTCGTAGTAGGAGTTGCTATTGGCGTTGTTGTAGCCGTTAACAAAAAAACTGATGACCCTGAGATTCAAACCCAACAAAGGTCTCTCAGAGTTATCTGCCAAAACACTGATGACCAAAAACTCTGCCATGACACCCTTAGCTCTGTTCGTGGTGCTGATGCCTCTGACCCAAAGGCTTACATTGCTGCTGCTGTGAAAGCCACCACAGACAGTGTCATCAAAGCCTTTAACATGAGTGATAGGCTCACAACAGATTATGGGAACAAGGACAATGGTGTCAAAATGGCCCTTGATGATTGCAAGGACCTTTTGGAATATGCAATGGACAGTCTTGAACTCTCCAGCATCTTCCTTCGTGACAACAACATCAAATCAGTCCATGATCAAACCCCTGATCTCAGAAACTGGTTGAGTGCTGTTATCTCATATCAGCAAAGTTGCATGGAAGGTTTTGATGATGAGAAAGACGGTGAAGTAAAGGTCAAGGAACAGTTTCAAACAGAGAGTTTGGACCAAGTTGGGAAAATCACTGCTGTTGCTCTTGACATTGTCACTGGTTTAACAAAGATCCTTGAGCAATTCAACTTGAAGCTTGATCTTAAACCTGCTTCTCGTCGTCTTCTTGGTGAGGTGGAGGTTGATAATGAAGGATACCCTTCATGGTTCTCTGCTGCTGATCGTAAGCTTTTGGGTGCACTTCAAAGAAGAGGGTGGAGATCACGTGTTAAGCCTAATGTTGTGGTTGCTAAGGATGGTTCTGGTCAATTCAAAACCATTGCTGATGCCATTAAGTCTTATCCTAGTGGTAACAAAGGCAGATATGTTATCTATGTTAAGGCTGGTGTCTATGATGAGTACATCACTGTCCCTAAAGAAGCTGTTAACATTCTTATGTTTGGTGATGGCCCTACAAAGACCATTGTCACCGGTCGTAAGAGCTTTGCTGGGGGTGTCAAGACCATGCAAACTGCCACCTTCGCAAATACTGCTAATGGATTCATTGGAAAGGCAATGACATTTGAGAACACAGCTGGTCCTAGTGGACACCAAGCCGTTGCTCTTAGAAACCAGGGAGACATGTCTGCATTTGTTGGTTGCCACATTTTGGGTTACCAGGACACTTTGTATGTTCAAACCAACAGGCAATTCTACCGCAACTGTGTGATCTCTGGTACCATTGATTTCATCTTTGGTATGTCTGCCACATTGATCCAACACTCTGTGATCATTGTGAGGAAGCCACTGGGAAATCAATTTAACACAGTGACAGCAGATGGAACAACAGAGAAGAACATGGCTACTGGTATTGTTATCCAGGATTGTCAGATTGTCCCTGAAGCAGCATTGTTCCCTGTGAGGTTCCAAATAAAATCTTACTTGGGTAGGCCATGGAAGCAATTCTCAAAGACAGTGGTGATGGAATCTGCTTTGGGTGACTTTATTCATCCAGAGGGGTGGTTCCCATGGGATGGAACTCAATTTCTTGACACATTGTACTATGCTGAGTATGGAAACAGTGGACCTGGTGCCAATGTTCAAGGAAGGATCAAGTGGAGGGGTTACCGTGGACTCATTAGCAAAGCTGAAGCTGCTCAATTCACTGCTGGACAATTCCTTAAGGCTGGACCTGGCGCTGGAACTAATTGGTTGAAGGCTCTTCATGTTCCTCACTACCTTGGCTTCAAAAACTGA 1731 0.4408 MSGKIIISAVSLILVVGVAIGVVVAVNKKTDDPEIQTQQRSLRVICQNTDDQKLCHDTLSSVRGADASDPKAYIAAAVKATTDSVIKAFNMSDRLTTDYGNKDNGVKMALDDCKDLLEYAMDSLELSSIFLRDNNIKSVHDQTPDLRNWLSAVISYQQSCMEGFDDEKDGEVKVKEQFQTESLDQVGKITAVALDIVTGLTKILEQFNLKLDLKPASRRLLGEVEVDNEGYPSWFSAADRKLLGALQRRGWRSRVKPNVVVAKDGSGQFKTIADAIKSYPSGNKGRYVIYVKAGVYDEYITVPKEAVNILMFGDGPTKTIVTGRKSFAGGVKTMQTATFANTANGFIGKAMTFENTAGPSGHQAVALRNQGDMSAFVGCHILGYQDTLYVQTNRQFYRNCVISGTIDFIFGMSATLIQHSVIIVRKPLGNQFNTVTADGTTEKNMATGIVIQDCQIVPEAALFPVRFQIKSYLGRPWKQFSKTVVMESALGDFIHPEGWFPWDGTQFLDTLYYAEYGNSGPGANVQGRIKWRGYRGLISKAEAAQFTAGQFLKAGPGAGTNWLKALHVPHYLGFKN. 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05593 576 Pfam Pectinesterase 258 553 IPR000070 GO:0030599|GO:0042545
Seca1g05593 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 200 IPR035513 -
Seca1g05593 576 ProSitePatterns Pectinesterase signature 1. 283 302 IPR018040 -
Seca1g05593 576 ProSitePatterns Pectinesterase signature 2. 402 411 IPR033131 -
Seca1g05593 576 Gene3D - 252 574 IPR012334 -
Seca1g05593 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 201 IPR035513 -
Seca1g05593 576 FunFam Pectinesterase 252 574 - -
Seca1g05593 576 SMART PMEI_2 37 196 IPR006501 GO:0004857
Seca1g05593 576 Pfam Plant invertase/pectin methylesterase inhibitor 43 196 IPR006501 GO:0004857
Seca1g05593 576 FunFam Pectinesterase 38 201 - -
Seca1g05593 576 CDD PMEI-like_3 45 202 - -
Seca1g05593 576 SUPERFAMILY Pectin lyase-like 254 569 IPR011050 -
Seca1g05593 576 PANTHER PECTINESTERASE 15 564 - -
Seca1g05593 576 NCBIfam pectinesterase inhibitor domain 15 197 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05593 Seca-Chr1 159605573 159608170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05593 1 574 Carbohydrate Esterase AT2G47030 40.394 1.14e-139 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05593 K01051 - gmx:100781507 872.848