Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05589 ATGAGTTGTTTCAGCTGTTGTGAAGAAGATGACTTCCACAAGACTGCTGAAAGTGGAGGACCATATGTGGTGAAAAACTCAGCAGGAAATGATGGAAATCATCATGCTTCTGAAACTGCAAAGCAGGGTGCTCAAACTGTTAAAATTCAGCCCATTGAAGTTCCTGAAATACCAGTGGAAGAACTCAAAGAAATTACAGATAGCTTTGGAGAAAGTTCTCTGATTGGAGAGGGATCCTATGGAAGAGTATATTATGGTGTTCTTAAAAGTGGGCAGGCTGCAGCAATCAAGAAATTAGATGCCAGTAAACAGCCTGATGATGAATTTTTAGCCCAGGTTTCAATGGTTTCACGGCTGAAGCATGACAATTTTGTTCAATTGCTTGGTTATTGCGTTGATGGAAACTCACGAGTTCTTGCTTATGAGTTTGCATCCAATGGGTCTCTTCATGATATTTTACATGGCAGAAAAGGTGTTAAAGGAGCACAGCCTGGTCCTGTTCTGACATGGGCACAGAGGGTTAAAATTGCTGTAGGGGCTGCGAAAGGGCTTGAGTACTTGCATGAGAAGGCTGATCCCCACATTATCCACCGGGACATCAAGTCAAGCAATGTACTAATCTTTGATGATGATGTTGCTAAAATTGCAGATTTTGATTTGTCAAATCAGGCTCCTGACATGGCAGCACGTCTTCATTCCACCCGTGTCCTTGGGACCTTTGGTTATCATGCACCAGAATATGCAATGACTGGGCAATTGAATGCTAAGAGCGATGTATACAGTTTTGGTGTTGTCCTTCTGGAACTTTTGACTGGAAGGAAGCCTGTTGATCACACACTACCACGTGGGCAGCAGAGCCTGGTTACTTGGGCTACACCAAAACTCAGTGAGGATAAAGTCAGACAGTGTGTAGATGCAAGACTAGGAGGAGAGTACCCGCCCAAAGCTGTTGCTAAGGTGCTTACTGTGTTTTAG 975 0.4369 MSCFSCCEEDDFHKTAESGGPYVVKNSAGNDGNHHASETAKQGAQTVKIQPIEVPEIPVEELKEITDSFGESSLIGEGSYGRVYYGVLKSGQAAAIKKLDASKQPDDEFLAQVSMVSRLKHDNFVQLLGYCVDGNSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGEYPPKAVAKVLTVF. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05589 324 Pfam Protein tyrosine and serine/threonine kinase 74 279 IPR001245 GO:0004672|GO:0006468
Seca1g05589 324 MobiDBLite consensus disorder prediction 30 44 - -
Seca1g05589 324 MobiDBLite consensus disorder prediction 18 44 - -
Seca1g05589 324 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Seca1g05589 324 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Seca1g05589 324 SUPERFAMILY Protein kinase-like (PK-like) 48 321 IPR011009 -
Seca1g05589 324 FunFam pto-interacting protein 1 145 324 - -
Seca1g05589 324 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 4 323 - -
Seca1g05589 324 FunFam PTI1-like tyrosine-protein kinase 3 33 143 - -
Seca1g05589 324 Gene3D Transferase(Phosphotransferase) domain 1 144 324 - -
Seca1g05589 324 Gene3D Phosphorylase Kinase; domain 1 29 143 - -
Seca1g05589 324 ProSiteProfiles Protein kinase domain profile. 69 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05589 324 SMART serkin_6 69 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05589 Seca-Chr1 159578916 159581517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05589 60 323 Receptor kinase-like Gene Family AT4G02010 51.866 3.45e-84 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Seca1g05589 PK_Tyr_Ser-Thr 4.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05589 K13436 - gmx:100499642 595.504