Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05586 ATGGACGACTGCTGTGCTGTTTGCGCCGAGCCATTGGAATGGGTTGCGTACGGACCCTGTTTGCACCGGGAGGTATGTTCCACCTGCGTCGCCCGCCTCCGTTTCATATGCGACGATCGCCGTTGCTGCATCTGCAAGACCGAGTGCAACCTCGTATTCGTTACTAAGGCTCTAGGGGATTATACAAGGATGATCAATGATTTTTCAGCCCTGCCAGTTGAGGTAAGGGAGGGCAAGGTTGGATCATACTGGTACCATGAGGATACAAACGCCTTTTTCGATGATGTGGATCATTACAAGATGATCAAGGCTATGTGCAGGCTTTCATGCAATGTATGTGACAAGATGGAGGAGCAACCACATGATGGTTCAAGGCGACGGCAAAGGTTTAGGAATATAGGACAGCTGAAGGGTCACTTATTCCACCGTCATAAGTTGCATATGTGCAGTTTATGTCTGGAGGGAAGGAAGGTATTTATATGTGAGCAAAAACTATACACTAGAGCACAGCTGAATCAACACATAAGCACAGGTGATTCTGAGGTGGATGGAAGTGAGAGTGAGAGAGGTGGTTTTATGGGGCATCCTATGTGTGAATTCTGCAGAACCCCATTTTATGGGGACAATGAACTATACACGCATATGTCTACAGAGCATTATACATGCCACATTTGCCAAAGGCAGCATCCAGGACAATATGAATACTATAAGAATTATGATGACCTAGAGATCCACTTCCGTCAAGAGCACTTTTTATGCGAAGATGAGGCTTGTCTTGCCAAGAAATTTGTTGTGTTTCAATCTGAAGCAGAGATGAAGAGGCACAATGCTCTTGAACATGGAGGGCGAATGTCACGGTCAAAGCGCAATGCTGCTCTTCAGATACCAACTAGCTTCAAATACAGACATGGTAATGAGCAGGAGCAACGCCGTGGAAGAGGTCGTACGTTTCGTCGTGATTTTTCTGAAAATCAACTTTCTATGGCCATTCAAGCCAGTTTGGAGACGGCTAATGCTGAGCAAACATTTCATAATCCATCAACATCAAGTAATGGAGAAATTGCTGTTGATGATGGGGATGCTGATATTGATTCTATCATTCAGCCTTTTGAATCATTAGGTACAGCTGGTTCTGAGTCATCTTCAAGATACCTTCAAGCCTTAGGACATAGTGCTAAGAATGGACCTCTGGAAGATTCTTCCTTTCCTCCGCTTCCCATAGTTTCAGGCAATGGCCAGCAAAGATCCAGACATGAGTTGGAAGGTTCATCTAGTAACACTATGGCAGCGCGTTTGCGCCGGCATGGCAACAGAAATGTATCTGTAATTAATTCTGGTAATGCTTGGTCTGTAGCGGGCCGTGGACCTGTACAATCATCAAGTAATTCTTCACAATCTAATATGTCTGCAAATCTTGCCCTTGGAGTGTCTCGTAATTCTGGTCAGATGAAGACAATTAACAATGGTCTTTCACAATCAACTTATGCTAGTTCTATTCAGGGTATGCACAGAACTGCTCATGGACAATTACCCGCTAGTTCATCAAGGGACACACGCGACAGTGGTAGAATGGTTCACTCTGCATCTGCTCCAAACCTCATTGAGAGCAATCCTGTTGAAGTTTCAATTTCCGATTTTCCTCCAGTTTCTGCCACACAAGTGAGTAAGTTGCCTACAAGTAGCCAGTCTCTATTGAATGTGGAGAATGTTCAGTCTGCTAACAAGTCCTTGGTTGAAAAGATTCGCGGTGCTCTTGATTTTGATGAAGATAGATACTCTATATTTAAAGATATATCTGGTCAATATCGCCAAGGCACAATAGATACAGGTACATATGTGGAGTATGTGCAGCAGTTTGGCTTGTCACATCTTGTACTTGAGTTGGCAAGACTATGCCCGGATGTTCAGAAGCAGAAAGAACTTGTCGAGTCCTACGCAAATTTGCAAAAAAATGCTTTACAAGATAATAACTGGATTGGTGGTGGCACTAGCATTCATCGGAAGGCCAGTAATGCCAACAAGAAAGGTAAAGGGAAGGCTGTAGATGGTACGGGGAGTAACTCCACAGAGAGATTAGCAGATAGCTTTTTAAACACTGTACATCGGCTACAGTCAAATTATAAATCTTCAGAAGAGAATTCGGAGGTACTATCAAAGGGTGATTACCGCACTGAGAAAGGCAAATTAAAAATTGAGCAGCAGACTGGTACAAACTCTGGTAGTCAACCTAAGAAGAAGGAAACATCAAATGGCAGCTTATCTAATCAAAATAGAGAGGATGGGGGTGGTGGGAATAAGCAACGCAAAAAATCTTCCAAGTTCCTCAGAGTGCGACTCGGTGATGGTTCTGCTTCGGCCCTTCTAGATCTTGAAAACTCACGCGCCGAATCAGATCCTGGAACAACAGACAGTTTAGAAGGTAACAACAATGACTCTGGAGGAGGGCTGCCTGTACGAGGTGTTTGGCGAAATGGGGGAGGCCAGAAACTCTTTTCCTGA 2499 0.4422 MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDDRRCCICKTECNLVFVTKALGDYTRMINDFSALPVEVREGKVGSYWYHEDTNAFFDDVDHYKMIKAMCRLSCNVCDKMEEQPHDGSRRRQRFRNIGQLKGHLFHRHKLHMCSLCLEGRKVFICEQKLYTRAQLNQHISTGDSEVDGSESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRQEHFLCEDEACLAKKFVVFQSEAEMKRHNALEHGGRMSRSKRNAALQIPTSFKYRHGNEQEQRRGRGRTFRRDFSENQLSMAIQASLETANAEQTFHNPSTSSNGEIAVDDGDADIDSIIQPFESLGTAGSESSSRYLQALGHSAKNGPLEDSSFPPLPIVSGNGQQRSRHELEGSSSNTMAARLRRHGNRNVSVINSGNAWSVAGRGPVQSSSNSSQSNMSANLALGVSRNSGQMKTINNGLSQSTYASSIQGMHRTAHGQLPASSSRDTRDSGRMVHSASAPNLIESNPVEVSISDFPPVSATQVSKLPTSSQSLLNVENVQSANKSLVEKIRGALDFDEDRYSIFKDISGQYRQGTIDTGTYVEYVQQFGLSHLVLELARLCPDVQKQKELVESYANLQKNALQDNNWIGGGTSIHRKASNANKKGKGKAVDGTGSNSTERLADSFLNTVHRLQSNYKSSEENSEVLSKGDYRTEKGKLKIEQQTGTNSGSQPKKKETSNGSLSNQNREDGGGGNKQRKKSSKFLRVRLGDGSASALLDLENSRAESDPGTTDSLEGNNNDSGGGLPVRGVWRNGGGQKLFS. 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05586 832 MobiDBLite consensus disorder prediction 795 811 - -
Seca1g05586 832 MobiDBLite consensus disorder prediction 731 761 - -
Seca1g05586 832 CDD RING-HC_ZNF598 3 54 IPR041888 -
Seca1g05586 832 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Seca1g05586 832 MobiDBLite consensus disorder prediction 503 526 - -
Seca1g05586 832 MobiDBLite consensus disorder prediction 705 832 - -
Seca1g05586 832 SMART c2h2final6 251 280 IPR013087 -
Seca1g05586 832 SMART c2h2final6 220 250 IPR013087 -
Seca1g05586 832 SMART c2h2final6 108 144 IPR013087 -
Seca1g05586 832 SMART c2h2final6 196 219 IPR013087 -
Seca1g05586 832 MobiDBLite consensus disorder prediction 664 688 - -
Seca1g05586 832 PANTHER ZINC FINGER PROTEIN 598 1 751 IPR044288 GO:0061630|GO:0072344
Seca1g05586 832 MobiDBLite consensus disorder prediction 503 518 - -
Seca1g05586 832 MobiDBLite consensus disorder prediction 714 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05586 Seca-Chr1 159545468 159549470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05586 1 832 C2H2 Transcription Factor Family AT3G62240 55.012 0.0 872