Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05580 ATGGCATCAGGGGGTGTGGTACCTGCTTCTGGATTGACGGATATGAATGCAAGTTCTGTTGGTGTTGAAAGGTTGCCAGAGGAGATGAATGTAATGAAAATCAGGGATGACAAGAACTTGTTGAACAAAATGCAGGAAATGGAAGCCACCGTGGTAGATGGAAATGGGACCGAAACAGGACATATAATTGTCACCACCATTGGTGGTAAAAATGGCCAGCCCAAACAGACAATAAGCTACATGGCCGAGCGTGTTGTTGGACATGGGTCTTTTGGTGTAGTTTTCCAGGCAAAGTGCTTGGAGACTGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTGCAAACCATGCGCCTTCTGGACCACCCTAATGTTGTATCTTTGAAGCATTGTTTCTTTTCAACAACCGAAAAAGATGAGCTTTATCTTAATCTGGTGCTTGAGTATGTTCCTGAGACCCTCAATCGTGTGATCAGACACTACAACAAAATGAATCAAAGAATGCCATTAATATATGTGAAACTTTATTCTTATCAGATTTGCAGAGCACTTGCTTATATTCACAACAGTATTGGAGTATGTCACAGGGATATAAAGCCTCAGAACTTACTGGTCAATCCCCACACCCACCAGCTGAAGATATGTGACTTTGGAAGTGCTAAAGTCTTGGTAAAAGGAGAACCAAACATATCTTACATCTGTTCTAGGTACTATAGAGCTCCGGAGCTTATATTCGGTGCAACCGAGTACACCCCAGCCATTGACATCTGGTCAGCTGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGCCGCTCTTTCCCGGTGAGAGTGGAGTGGACCAGCTTGTGGAAATTATCAAGGTTTTAGGTACACCAACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACACAGAGTTTAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGATCTTTCACAAGAGAATGCCACCTGAAGCCGTGGATCTTGTCTCAAGACTATTGCAATACTCTCCAAATCTTCGAAGCACAGCTTTGGAGGCTCTGGCTCATCCATTCTTTGATGAGCTGCGTGATCCAAATACCCGGTTGCCAAATGGGCGTTTCCTTCCTCCACTATTTAACTTCAAAGCCAATGAACTTAAGGGAGTACCTGCTGAGATGCTGGTGAAGCTGATTCCACCTCATGCAAGAAAGCAGTGTGCCTTATTTGGGTCATAA 1251 0.4349 MASGGVVPASGLTDMNASSVGVERLPEEMNVMKIRDDKNLLNKMQEMEATVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETLNRVIRHYNKMNQRMPLIYVKLYSYQICRALAYIHNSIGVCHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTPAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALEALAHPFFDELRDPNTRLPNGRFLPPLFNFKANELKGVPAEMLVKLIPPHARKQCALFGS. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05580 416 ProSitePatterns Protein kinases ATP-binding region signature. 86 110 IPR017441 GO:0005524
Seca1g05580 416 FunFam Shaggy-related protein kinase kappa 160 408 - -
Seca1g05580 416 SMART serkin_6 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05580 416 Gene3D Phosphorylase Kinase; domain 1 64 159 - -
Seca1g05580 416 ProSiteProfiles Protein kinase domain profile. 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05580 416 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 44 410 - -
Seca1g05580 416 Pfam Protein kinase domain 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05580 416 CDD STKc_GSK3 75 367 IPR039192 -
Seca1g05580 416 Gene3D Transferase(Phosphotransferase) domain 1 160 408 - -
Seca1g05580 416 FunFam Glycogen synthase kinase-3 beta 64 159 - -
Seca1g05580 416 SUPERFAMILY Protein kinase-like (PK-like) 79 389 IPR011009 -
Seca1g05580 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05580 Seca-Chr1 159493113 159496555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05580 80 373 MAP Kinase Gene Family AT1G73670 39.617 7.04e-57 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca1g05580 Pkinase 4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05580 K00924 - gmx:100788046 780.785